NP-MRD: Showing NP-Card for Gelsedine (NP0067356)

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Record Information

Version

2.0

Created at

2022-04-28 12:06:59 UTC

Updated at

2022-04-28 12:06:59 UTC

NP-MRD ID

NP0067356

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gelsedine

Description

(1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-1,2-dihydro-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]Undecane]-2-one belongs to the class of organic compounds known as gelsemium alkaloids. These are alkaloids with a structure that is based on the tetracyclic gelsemium skeleton. These alkaloids contain an oxindole function and a cage-like, hydroaromatic residue which is believed to arise from an intermediate related to anhydrovobasinediol by formation of a 6,20 bond and rearrangement to an oxindole. Gelsedine is found in Gelsemium elegans and Gelsemium sempervirens . The major alkaloids in this group are related to Gelsemine; however, a smaller group, characterized by Gelsedine, lack the 6,20 bond, and have also lost C-21 (1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-1,2-dihydro-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]Undecane]-2-one is a very strong basic compound (based on its pKa) (1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-1,2-dihydro-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]Undecane]-2-one is a potentially toxic compound.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv0541 08291401082D          

 29 33  0  0  1  0            999 V2000
   -1.7671    0.6127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6959    3.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2380   -0.0203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9734   -0.6134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4902    0.0297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1581   -0.4873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1917    0.7988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9402   -0.9296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4187    0.9798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5182   -1.0933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2082   -0.5257    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6963   -0.3245    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8596    0.2818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4252    0.1215    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7001    0.6277    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3764    0.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -0.3349    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1285    1.3986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0883    0.5746    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0782    0.8797    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9246    1.6151    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4854    1.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2174    2.3864    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2287   -0.8723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2912   -1.1824    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4538    0.0024    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9292    0.7747    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6413    1.4506    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8026   -0.2070    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  5  4  2  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
 11  8  1  0  0  0  0
 12 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  6  2  0  0  0  0
 14  3  1  1  0  0  0
 14 11  1  0  0  0  0
 15  9  1  0  0  0  0
 15 12  1  0  0  0  0
 16  7  2  0  0  0  0
 16 13  1  0  0  0  0
 17  8  1  0  0  0  0
 19  9  1  0  0  0  0
 19 13  1  0  0  0  0
 19 17  1  0  0  0  0
 19 18  1  1  0  0  0
 20 14  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 21 18  1  0  0  0  0
 22 18  2  0  0  0  0
 23  2  1  0  0  0  0
 23 21  1  0  0  0  0
 24 10  1  0  0  0  0
 24 17  1  0  0  0  0
 11 25  1  6  0  0  0
 12 26  1  6  0  0  0
 14 27  1  6  0  0  0
 15 28  1  6  0  0  0
 17 29  1  1  0  0  0
M  END

     RDKit          3D

 48 52  0  0  0  0  0  0  0  0999 V2000
    4.5157    1.5466    1.4263 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7744    1.4314    0.0857 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2108    0.0534    0.0396 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2848   -0.2245    1.1194 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5069   -1.3899    0.6624 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1005   -1.1547    1.0543 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6603   -0.1874    0.2114 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8981    1.1226    0.8554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0039    1.9443    1.2215 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2827    1.3722    1.0281 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8146    2.4974    1.5491 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7919    3.0490    0.7295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9582    0.2199    0.5470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3109   -0.0644    0.5054 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8183   -1.2506    0.0242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9130   -2.1885   -0.4348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5713   -1.9038   -0.3926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0675   -0.7197    0.0873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1452   -0.0197   -1.1771 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1865    0.6381   -1.3159 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3706   -0.2533   -1.1757 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8245   -1.6266   -0.7477 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7653   -2.1113   -1.6496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2614   -1.2095   -1.8529 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8489    1.9443    2.2201 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8253    0.5214    1.7855 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4589    2.1072    1.3195 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5572    1.5143   -0.6966 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0560    2.2359   -0.0408 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0499   -0.6927    0.0337 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7589   -0.4046    2.0218 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8882   -2.2495    1.2769 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0961   -0.7501    2.0969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4114   -2.1476    1.1348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9232    2.4967   -0.2222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7348    3.1663    1.3099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4601    4.0749    0.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0279    0.6655    0.8636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8753   -1.4647   -0.0052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2592   -3.1428   -0.8258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8884   -2.6501   -0.7522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8770    0.6823   -1.6863 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2649    1.0808   -2.3618 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2673    1.4909   -0.6188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9769   -0.3508   -2.0966 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7104   -2.3145   -0.8596 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2345   -2.2872   -2.6607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4212   -3.0969   -1.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  7  6  1  1
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
  7 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 21  3  1  0
 22  5  1  0
 18  7  1  0
 24 19  1  0
 18 13  1  0
  3 30  1  1
  2 28  1  0
  2 29  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  4 31  1  0
  5 32  1  1
  6 33  1  0
  6 34  1  0
 12 35  1  0
 12 36  1  0
 12 37  1  0
 14 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
 19 42  1  6
 20 43  1  0
 20 44  1  0
 21 45  1  6
 22 46  1  1
 23 47  1  0
 23 48  1  0
M  END


  Mrv0541 08291401082D          

 29 33  0  0  1  0            999 V2000
   -1.7671    0.6127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6959    3.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2380   -0.0203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9734   -0.6134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4902    0.0297    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1581   -0.4873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1917    0.7988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9402   -0.9296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4187    0.9798    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5182   -1.0933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2082   -0.5257    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6963   -0.3245    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8596    0.2818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4252    0.1215    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7001    0.6277    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3764    0.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -0.3349    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1285    1.3986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0883    0.5746    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0782    0.8797    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9246    1.6151    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4854    1.9155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2174    2.3864    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2287   -0.8723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2912   -1.1824    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4538    0.0024    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9292    0.7747    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6413    1.4506    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8026   -0.2070    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  5  4  2  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
 11  8  1  0  0  0  0
 12 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  6  2  0  0  0  0
 14  3  1  1  0  0  0
 14 11  1  0  0  0  0
 15  9  1  0  0  0  0
 15 12  1  0  0  0  0
 16  7  2  0  0  0  0
 16 13  1  0  0  0  0
 17  8  1  0  0  0  0
 19  9  1  0  0  0  0
 19 13  1  0  0  0  0
 19 17  1  0  0  0  0
 19 18  1  1  0  0  0
 20 14  1  0  0  0  0
 20 15  1  0  0  0  0
 21 16  1  0  0  0  0
 21 18  1  0  0  0  0
 22 18  2  0  0  0  0
 23  2  1  0  0  0  0
 23 21  1  0  0  0  0
 24 10  1  0  0  0  0
 24 17  1  0  0  0  0
 11 25  1  6  0  0  0
 12 26  1  6  0  0  0
 14 27  1  6  0  0  0
 15 28  1  6  0  0  0
 17 29  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0067356

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]1(CC)N[C@@]2([H])C[C@@]3(C(=O)N(OC)C4=CC=CC=C34)[C@@]3([H])C[C@]1([H])[C@]2([H])CO3

> <INCHI_IDENTIFIER>
InChI=1S/C19H24N2O3/c1-3-14-11-8-17-19(9-15(20-14)12(11)10-24-17)13-6-4-5-7-16(13)21(23-2)18(19)22/h4-7,11-12,14-15,17,20H,3,8-10H2,1-2H3/t11-,12+,14-,15+,17-,19+/m1/s1

> <INCHI_KEY>
LDBVYQSHIPCQPT-CTSQFDBHSA-N

> <FORMULA>
C19H24N2O3

> <MOLECULAR_WEIGHT>
328.4055

> <EXACT_MASS>
328.178692644

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
35.44023745398286

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-1,2-dihydro-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]undecane]-2-one

> <ALOGPS_LOGP>
1.87

> <JCHEM_LOGP>
1.7264607329999997

> <ALOGPS_LOGS>
-3.18

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
11.285165016826625

> <JCHEM_POLAR_SURFACE_AREA>
50.80000000000001

> <JCHEM_REFRACTIVITY>
89.21860000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.16e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]undecane]-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-AUG-14   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-AUG-14         0                                  
HETATM    1  C   UNK     0      -3.299   1.144   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.032   5.648   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.311  -0.038   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.417  -1.145   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.382   0.055   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.895  -0.910   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.825   1.491   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.755  -1.735   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.648   1.829   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.834  -2.041   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.389  -0.981   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.300  -0.606   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.338   0.526   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.794   0.227   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.307   1.172   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.303   1.726   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.710  -0.625   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.973   2.611   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.898   1.073   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0      -0.146   1.642   0.000  0.00  0.00           N+0
HETATM   21  N   UNK     0       5.459   3.015   0.000  0.00  0.00           N+0
HETATM   22  O   UNK     0       2.773   3.576   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       6.006   4.455   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       4.160  -1.628   0.000  0.00  0.00           O+0
HETATM   25  H   UNK     0      -0.544  -2.207   0.000  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.714   0.004   0.000  0.00  0.00           H+0
HETATM   27  H   UNK     0      -1.734   1.446   0.000  0.00  0.00           H+0
HETATM   28  H   UNK     0       1.197   2.708   0.000  0.00  0.00           H+0
HETATM   29  H   UNK     0       5.231  -0.386   0.000  0.00  0.00           H+0
CONECT    1    3                                                            
CONECT    2   23                                                            
CONECT    3    1   14                                                       
CONECT    4    5    6                                                       
CONECT    5    4    7                                                       
CONECT    6    4   13                                                       
CONECT    7    5   16                                                       
CONECT    8   11   17                                                       
CONECT    9   15   19                                                       
CONECT   10   12   24                                                       
CONECT   11    8   12   14   25                                             
CONECT   12   10   11   15   26                                             
CONECT   13    6   16   19                                                  
CONECT   14    3   11   20   27                                             
CONECT   15    9   12   20   28                                             
CONECT   16    7   13   21                                                  
CONECT   17    8   19   24   29                                             
CONECT   18   19   21   22                                                  
CONECT   19    9   13   17   18                                             
CONECT   20   14   15                                                       
CONECT   21   16   18   23                                                  
CONECT   22   18                                                            
CONECT   23    2   21                                                       
CONECT   24   10   17                                                       
CONECT   25   11                                                            
CONECT   26   12                                                            
CONECT   27   14                                                            
CONECT   28   15                                                            
CONECT   29   17                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₄N₂O₃

Average Mass

328.4055 Da

Monoisotopic Mass

328.17869 Da

IUPAC Name

(1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-1,2-dihydro-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]undecane]-2-one

Traditional Name

(1'R,3S,4'S,6'R,7'R,8'S)-6'-ethyl-1-methoxy-10'-oxa-5'-azaspiro[indole-3,2'-tricyclo[5.3.1.0⁴,⁸]undecane]-2-one

CAS Registry Number

Not Available

SMILES

[H][C@]1(CC)N[C@@]2([H])C[C@@]3(C(=O)N(OC)C4=CC=CC=C34)[C@@]3([H])C[C@]1([H])[C@]2([H])CO3

InChI Identifier

InChI=1S/C19H24N2O3/c1-3-14-11-8-17-19(9-15(20-14)12(11)10-24-17)13-6-4-5-7-16(13)21(23-2)18(19)22/h4-7,11-12,14-15,17,20H,3,8-10H2,1-2H3/t11-,12+,14-,15+,17-,19+/m1/s1

InChI Key

LDBVYQSHIPCQPT-CTSQFDBHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gelsemium elegans	Plant	KNApSAcK
Gelsemium sempervirens	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gelsemium alkaloids. These are alkaloids with a structure that is based on the tetracyclic gelsemium skeleton. These alkaloids contain an oxindole function and a cage-like, hydroaromatic residue which is believed to arise from an intermediate related to anhydrovobasinediol by formation of a 6,20 bond and rearrangement to an oxindole. The major alkaloids in this group are related to Gelsemine; however, a smaller group, characterized by Gelsedine, lack the 6,20 bond, and have also lost C-21.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Gelsemium alkaloids

Sub Class

Not Available

Direct Parent

Gelsemium alkaloids

Alternative Parents

Substituents

C21-norgelsemium skeleton
Indole or derivatives
Oxepane
Aralkylamine
Oxane
Benzenoid
Pyrrolidine
Amino acid or derivatives
Carboxylic acid derivative
Dialkyl ether
Secondary aliphatic amine
Ether
Secondary amine
Oxacycle
Azacycle
Organoheterocyclic compound
Organonitrogen compound
Organic oxygen compound
Organooxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Amine
Organic nitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.87	ALOGPS
logP	1.73	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Basic)	11.29	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	50.8 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	89.22 m³·mol⁻¹	ChemAxon
Polarizability	35.44 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00025088

Chemspider ID

Not Available

KEGG Compound ID

C19982

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21589070

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Gelsedine (NP0067356)

MOL for NP0067356 (Gelsedine)

3D MOL for NP0067356 (Gelsedine)

3D SDF for NP0067356 (Gelsedine)

3D-SDF for NP0067356 (Gelsedine)

PDB for NP0067356 (Gelsedine)

3D PDB for NP0067356 (Gelsedine)

SMILES for NP0067356 (Gelsedine)

INCHI for NP0067356 (Gelsedine)

Structure for NP0067356 (Gelsedine)

3D Structure for NP0067356 (Gelsedine)