NP-MRD: Showing NP-Card for Delnuttidine (NP0067174)

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Record Information

Version

2.0

Created at

2022-04-28 11:24:59 UTC

Updated at

2022-04-28 11:24:59 UTC

NP-MRD ID

NP0067174

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Delnuttidine

Description

Delnuttidine is found in Delphinium nuttalianum.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 49 55  0  0  0  0  0  0  0  0999 V2000
    4.6847   -0.5961    1.0307 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4347   -0.4124    0.6842 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8888    0.9520    0.4949 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4065    0.7907    0.3354 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7255    2.0893    0.1896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7275    1.9290    0.1430 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2728    3.1963    0.0540 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2890    0.9402   -0.8311 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6292    0.4619   -0.3520 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0491   -0.7931    0.2359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2209    0.3555   -1.6879 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3561   -0.8247   -2.1556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8347   -1.4741   -3.0335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0036   -1.1543   -1.5644 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4584   -0.2883   -0.5367 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6909   -0.1719    0.8690 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7598    0.0044    1.4318 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4003   -1.3715    1.5088 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4678   -2.3774    1.2407 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4963   -1.5374    0.4613 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7837   -1.3431   -0.8797 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0352   -0.0476   -0.8410 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2782    1.1293    1.2606 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6668    1.3392    0.7538 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0379   -1.6347    1.1578 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3609    0.2415    1.1905 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1430    1.6461    1.2884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2806    1.3160   -0.5002 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9863    2.7304    1.0548 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0690    2.6008   -0.7109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6401    3.8994   -0.1826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1063    1.2457   -1.8177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2816   -0.8158    1.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6787   -1.7634    0.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1654   -0.9180   -0.0378 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2835    0.0186   -1.7060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1328    1.1987   -2.3678 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3571   -0.9940   -2.4916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8823   -2.2581   -1.4342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9678   -1.0076    1.5036 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7293    0.5042    2.4001 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7910   -1.5789    2.5306 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9214   -3.1843    0.8427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9301   -2.5263    0.5748 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5867   -1.2531   -1.6436 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1595   -2.2268   -1.0720 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0771    0.5029   -1.7823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2909    1.0999    1.6673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8927    2.3609    0.5295 H   0  0  0  0  0  0  0  0  0  0  0  0
  9 10  1  1
  9 24  1  0
 24 23  1  0
 23 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  4  5  1  6
  5  6  1  0
  6  7  1  6
  6  8  1  0
  8 15  1  0
 15 14  1  6
 14 12  1  0
 12 13  2  0
 12 11  1  0
  8  9  1  0
 11  9  1  0
  6 23  1  0
 15 16  1  0
  4 17  1  0
  2 20  1  0
 15 22  1  0
 10 33  1  0
 10 34  1  0
 10 35  1  0
 24 48  1  0
 24 49  1  0
 16 40  1  1
 17 41  1  1
 18 42  1  1
 19 43  1  0
 20 44  1  6
 21 45  1  0
 21 46  1  0
 22 47  1  6
  3 27  1  0
  3 28  1  0
  1 25  1  0
  1 26  1  0
  5 29  1  0
  5 30  1  0
  7 31  1  0
  8 32  1  6
 14 38  1  0
 14 39  1  0
 11 36  1  0
 11 37  1  0
M  END


  Mrv1652304282213252D          

 24 30  0  0  1  0            999 V2000
    5.5936    0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1956    1.0998    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1303    1.9677    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3824    2.3429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3045    3.1642    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7177    1.8333    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7935    0.9482    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4814    0.7044    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3495   -0.2707    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6805   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9829   -0.2769    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0350    0.7845    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3357    1.2546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6368    0.8273    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4234   -0.0016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6491   -0.2865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1580   -0.5190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9663    0.0845    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8503    0.1712    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8228    0.0511    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9061   -0.1728    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5508   -0.6282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6555   -1.0368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9873    1.3320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  7  6  1  1  0  0  0
  8  7  1  1  0  0  0
  2  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 11 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 11  1  1  0  0  0
 19 20  1  0  0  0  0
  7 20  1  0  0  0  0
 20 21  1  6  0  0  0
  1 21  1  0  0  0  0
  9 21  1  0  0  0  0
 18 22  1  1  0  0  0
  9 23  1  6  0  0  0
  2 24  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0067174

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12CN3[C@@H]4[C@H]5[C@@H](O)[C@H]6C[C@@H]7[C@@]5(CC6=C)C[C@@]3(O)[C@H]1[C@]47CC(=O)C2

> <INCHI_IDENTIFIER>
InChI=1S/C20H25NO3/c1-9-4-18-7-20(24)16-17(2)5-10(22)6-19(16)12(18)3-11(9)14(23)13(18)15(19)21(20)8-17/h11-16,23-24H,1,3-8H2,2H3/t11-,12+,13+,14-,15+,16+,17+,18-,19-,20+/m0/s1

> <INCHI_KEY>
NZCDPOAGPNEXNJ-HDLSYCDGSA-N

> <FORMULA>
C20H25NO3

> <MOLECULAR_WEIGHT>
327.424

> <EXACT_MASS>
327.183443669

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
72.62797832875344

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,5S,8R,9S,10S,11S,14R,16R,17R,18R)-10,16-dihydroxy-5-methyl-12-methylidene-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-3-one

> <ALOGPS_LOGP>
0.18

> <JCHEM_LOGP>
0.019208038999999996

> <ALOGPS_LOGS>
-1.59

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.570405346978962

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.939715440513822

> <JCHEM_PKA_STRONGEST_BASIC>
7.483161720980008

> <JCHEM_POLAR_SURFACE_AREA>
60.77000000000001

> <JCHEM_REFRACTIVITY>
87.5697

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.41e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5S,8R,9S,10S,11S,14R,16R,17R,18R)-10,16-dihydroxy-5-methyl-12-methylidene-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      10.441   0.678   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.699   2.053   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.576   3.673   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.180   4.373   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       8.035   5.907   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       6.940   3.422   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.081   1.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.365   1.315   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.119  -0.505   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.870  -1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.568  -0.517   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.665   1.464   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.360   2.342   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.055   1.544   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.657  -0.003   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.212  -0.535   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.028  -0.969   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.670   0.158   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.321   0.319   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.136   0.095   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       9.158  -0.323   0.000  0.00  0.00           N+0
HETATM   22  O   UNK     0       2.895  -1.173   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       8.690  -1.935   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      11.176   2.486   0.000  0.00  0.00           C+0
CONECT    1    2   21                                                       
CONECT    2    1    3    8   24                                             
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   12   20                                             
CONECT    8    7    2    9                                                  
CONECT    9    8   10   21   23                                             
CONECT   10    9   11                                                       
CONECT   11   10   12   17   19                                             
CONECT   12   11    7   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   18                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   11                                                       
CONECT   18   14   19   22                                                  
CONECT   19   18   11   20                                                  
CONECT   20   19    7   21                                                  
CONECT   21   20    1    9                                                  
CONECT   22   18                                                            
CONECT   23    9                                                            
CONECT   24    2                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₅NO₃

Average Mass

327.4240 Da

Monoisotopic Mass

327.18344 Da

IUPAC Name

(1R,5S,8R,9S,10S,11S,14R,16R,17R,18R)-10,16-dihydroxy-5-methyl-12-methylidene-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-3-one

Traditional Name

(1R,5S,8R,9S,10S,11S,14R,16R,17R,18R)-10,16-dihydroxy-5-methyl-12-methylidene-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-3-one

CAS Registry Number

Not Available

SMILES

C[C@@]12CN3[C@@H]4[C@H]5[C@@H](O)[C@H]6C[C@@H]7[C@@]5(CC6=C)C[C@@]3(O)[C@H]1[C@]47CC(=O)C2

InChI Identifier

InChI=1S/C20H25NO3/c1-9-4-18-7-20(24)16-17(2)5-10(22)6-19(16)12(18)3-11(9)14(23)13(18)15(19)21(20)8-17/h11-16,23-24H,1,3-8H2,2H3/t11-,12+,13+,14-,15+,16+,17+,18-,19-,20+/m0/s1

InChI Key

NZCDPOAGPNEXNJ-HDLSYCDGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Delphinium nuttalianum	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.18	ALOGPS
logP	0.019	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	12.94	ChemAxon
pKa (Strongest Basic)	7.48	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	60.77 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	87.57 m³·mol⁻¹	ChemAxon
Polarizability	72.63 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Delnuttidine (NP0067174)

MOL for NP0067174 (Delnuttidine)

3D MOL for NP0067174 (Delnuttidine)

3D SDF for NP0067174 (Delnuttidine)

3D-SDF for NP0067174 (Delnuttidine)

PDB for NP0067174 (Delnuttidine)

3D PDB for NP0067174 (Delnuttidine)

SMILES for NP0067174 (Delnuttidine)

INCHI for NP0067174 (Delnuttidine)

Structure for NP0067174 (Delnuttidine)

3D Structure for NP0067174 (Delnuttidine)