NP-MRD: Showing NP-Card for Glycozolidal (NP0067023)

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Record Information

Version

2.0

Created at

2022-04-28 11:13:26 UTC

Updated at

2022-04-28 11:13:26 UTC

NP-MRD ID

NP0067023

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Glycozolidal

Description

Glycozolidal belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. Glycozolidal is found in Clausena excavata , Clausena lansium, Glycosmis mauritiana and Glycosmis pentaphylla . Glycozolidal is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
    5.4913   -1.6576    0.7923 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0977   -1.9007    0.7649 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1894   -0.9137    0.3832 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6386    0.3375    0.0193 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7197    1.3223   -0.3625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3714    1.0862   -0.3886 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2611    1.7817   -0.6928 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8372    1.0279   -0.5357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1610    1.2979   -0.7207 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1016    0.2934   -0.4721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4504    0.5501   -0.6548 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8662    1.8428   -1.0967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7146   -0.9578   -0.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7505   -1.9562    0.1940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9707   -1.7066    0.0232 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3774   -1.2312    0.1416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4499   -0.2410   -0.1035 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9301   -0.1688   -0.0229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8351   -1.1595    0.3597 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0056   -2.4067    1.4325 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9311   -1.6669   -0.2329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6937   -0.6695    1.3001 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6779    0.5572    0.0273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0602    2.3074   -0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2669    2.7850   -1.0112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4703    2.2881   -1.0586 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2665    2.0763   -2.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7423    2.5643   -0.2856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9252    1.8186   -1.4281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5034   -2.9544    0.5297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0441   -2.2033    0.4755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4617   -2.1426    0.6441 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 19  2  0
 19 18  1  0
 18  6  2  0
  6  7  1  0
  7  8  1  0
  8 17  2  0
 17 16  1  0
 16 13  2  0
 13 14  1  0
 14 15  2  0
 13 10  1  0
 10 11  1  0
 11 12  1  0
 10  9  2  0
  6  5  1  0
  5  4  2  0
  4  3  1  0
 17 18  1  0
  9  8  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
 19 32  1  0
  7 25  1  0
 16 31  1  0
 14 30  1  0
 12 27  1  0
 12 28  1  0
 12 29  1  0
  9 26  1  0
  5 24  1  0
  4 23  1  0
M  END


  Mrv1533004241516452D          

 19 21  0  0  0  0            999 V2000
    0.6159   -2.2741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4229   -2.4457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9749   -1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7200   -1.0479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2720   -0.4349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0790   -0.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7464   -0.1215    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139   -0.6064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2208   -0.4349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7729   -1.0479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5798   -0.8764    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8348   -0.0918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5179   -1.8326    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0700   -2.4457    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8150   -3.2303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7110   -2.0041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1589   -1.3910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3339   -1.3910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7819   -2.0041    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 13 16  2  0  0  0  0
 16 17  1  0  0  0  0
  8 17  2  0  0  0  0
 17 18  1  0  0  0  0
  6 18  2  0  0  0  0
 18 19  1  0  0  0  0
  3 19  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0067023

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(NC3=C2C=C(C=O)C(OC)=C3)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H13NO3/c1-18-10-3-4-13-12(6-10)11-5-9(8-17)15(19-2)7-14(11)16-13/h3-8,16H,1-2H3

> <INCHI_KEY>
WCKFRKXQABCDRE-UHFFFAOYSA-N

> <FORMULA>
C15H13NO3

> <MOLECULAR_WEIGHT>
255.273

> <EXACT_MASS>
255.089543283

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
27.293917008417687

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,6-dimethoxy-9H-carbazole-3-carbaldehyde

> <ALOGPS_LOGP>
3.03

> <JCHEM_LOGP>
2.4880455026666657

> <ALOGPS_LOGS>
-3.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.633049664032214

> <JCHEM_PKA_STRONGEST_BASIC>
-4.553472800002755

> <JCHEM_POLAR_SURFACE_AREA>
51.32

> <JCHEM_REFRACTIVITY>
72.98259999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.96e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,6-dimethoxy-9H-carbazole-3-carbaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       1.150  -4.245   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.656  -4.565   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.687  -3.421   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.211  -1.956   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.241  -0.812   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.747  -1.132   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       6.993  -0.227   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       8.239  -1.132   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.746  -0.812   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.776  -1.956   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      12.282  -1.636   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      12.758  -0.171   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.300  -3.421   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.331  -4.565   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      10.855  -6.030   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.794  -3.741   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.763  -2.597   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.223  -2.597   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.193  -3.741   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   19                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   18                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   17                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17                                                       
CONECT   17   16    8   18                                                  
CONECT   18   17    6   19                                                  
CONECT   19   18    3                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₃NO₃

Average Mass

255.2730 Da

Monoisotopic Mass

255.08954 Da

IUPAC Name

2,6-dimethoxy-9H-carbazole-3-carbaldehyde

Traditional Name

2,6-dimethoxy-9H-carbazole-3-carbaldehyde

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(NC3=C2C=C(C=O)C(OC)=C3)C=C1

InChI Identifier

InChI=1S/C15H13NO3/c1-18-10-3-4-13-12(6-10)11-5-9(8-17)15(19-2)7-14(11)16-13/h3-8,16H,1-2H3

InChI Key

WCKFRKXQABCDRE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clausena excavata	Plant	KNApSAcK
Clausena lansium	LOTUS Database	35616633
Glycosmis mauritiana	LOTUS Database	35616633
Glycosmis pentaphylla	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Carbazoles

Alternative Parents

Substituents

Carbazole
Indole
Anisole
Alkyl aryl ether
Aryl-aldehyde
Benzenoid
Pyrrole
Heteroaromatic compound
Ether
Azacycle
Hydrocarbon derivative
Aldehyde
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.03	ALOGPS
logP	2.49	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	14.63	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	51.32 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	72.98 m³·mol⁻¹	ChemAxon
Polarizability	27.29 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

182690

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Glycozolidal (NP0067023)

MOL for NP0067023 (Glycozolidal)

3D MOL for NP0067023 (Glycozolidal)

3D SDF for NP0067023 (Glycozolidal)

3D-SDF for NP0067023 (Glycozolidal)

PDB for NP0067023 (Glycozolidal)

3D PDB for NP0067023 (Glycozolidal)

SMILES for NP0067023 (Glycozolidal)

INCHI for NP0067023 (Glycozolidal)

Structure for NP0067023 (Glycozolidal)

3D Structure for NP0067023 (Glycozolidal)