Np mrd loader

Record Information
Version2.0
Created at2022-04-28 11:06:51 UTC
Updated at2022-04-28 11:06:51 UTC
NP-MRD IDNP0066882
Secondary Accession NumbersNone
Natural Product Identification
Common Name(-)-Goniomitine
DescriptionGoniomitine belongs to the class of organic compounds known as naphthyridines. Naphthyridines are compounds containing a naphthyridine moiety, a naphthalene in which a carbon atom has been replaced by a nitrogen in each of the two rings. The naphthyridine skeleton can also be described as an assembly two fused pyridine rings, which do not share their nitrogen atom. (-)-Goniomitine is found in Gonioma malagasy. (-)-Goniomitine was first documented in 2014 (PMID: 25270053). Based on a literature review a significant number of articles have been published on Goniomitine (PMID: 27666731) (PMID: 30500039) (PMID: 35426314) (PMID: 30520199) (PMID: 28706345) (PMID: 28128515).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC19H26N2O
Average Mass298.4300 Da
Monoisotopic Mass298.20451 Da
IUPAC Name2-[(2S,7R)-7-ethyl-1,3-diazatetracyclo[8.7.0.0^{2,7}.0^{12,17}]heptadeca-10,12,14,16-tetraen-11-yl]ethan-1-ol
Traditional Name2-[(2S,7R)-7-ethyl-1,3-diazatetracyclo[8.7.0.0^{2,7}.0^{12,17}]heptadeca-10,12,14,16-tetraen-11-yl]ethanol
CAS Registry NumberNot Available
SMILES
CC[C@]12CCCN[C@H]1N1C(CC2)=C(CCO)C2=CC=CC=C12
InChI Identifier
InChI=1S/C19H26N2O/c1-2-19-10-5-12-20-18(19)21-16-7-4-3-6-14(16)15(9-13-22)17(21)8-11-19/h3-4,6-7,18,20,22H,2,5,8-13H2,1H3/t18-,19+/m0/s1
InChI KeyCGWKMDYVWRDDRF-RBUKOAKNSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Gonioma malagasyPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as naphthyridines. Naphthyridines are compounds containing a naphthyridine moiety, a naphthalene in which a carbon atom has been replaced by a nitrogen in each of the two rings. The naphthyridine skeleton can also be described as an assembly two fused pyridine rings, which do not share their nitrogen atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazanaphthalenes
Sub ClassNaphthyridines
Direct ParentNaphthyridines
Alternative Parents
Substituents
  • Naphthyridine
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Piperidine
  • Substituted pyrrole
  • Benzenoid
  • Pyrrole
  • Heteroaromatic compound
  • Azacycle
  • Amine
  • Primary alcohol
  • Alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.11ALOGPS
logP3.63ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)15.82ChemAxon
pKa (Strongest Basic)9.53ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area37.19 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity89.96 m³·mol⁻¹ChemAxon
Polarizability35.28 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00024535
Chemspider ID28284854
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound24767757
PDB IDNot Available
ChEBI ID141908
Good Scents IDNot Available
References
General References
  1. Pritchett BP, Kikuchi J, Numajiri Y, Stoltz BM: Enantioselective Pd-Catalyzed Allylic Alkylation Reactions of Dihydropyrido[1,2-a]indolone Substrates: Efficient Syntheses of (-)-Goniomitine, (+)-Aspidospermidine, and (-)-Quebrachamine. Angew Chem Int Ed Engl. 2016 Oct 17;55(43):13529-13532. doi: 10.1002/anie.201608138. Epub 2016 Sep 26. [PubMed:27666731 ]
  2. Mijangos MV, Miranda LD: A unified synthesis of topologically diverse Aspidosperma alkaloids through divergent iminium-trapping. Org Biomol Chem. 2018 Dec 12;16(48):9409-9419. doi: 10.1039/c8ob02621a. [PubMed:30500039 ]
  3. Bell GE, Fyfe JWB, Israel EM, Slawin AMZ, Campbell M, Watson AJB: Synthesis of 2-BMIDA Indoles via Heteroannulation: Applications in Drug Scaffold and Natural Product Synthesis. Org Lett. 2022 Apr 29;24(16):3024-3027. doi: 10.1021/acs.orglett.2c00959. Epub 2022 Apr 15. [PubMed:35426314 ]
  4. Bin HY, Wang K, Yang D, Yang XH, Xie JH, Zhou QL: Scalable Enantioselective Total Synthesis of (-)-Goniomitine. Angew Chem Int Ed Engl. 2019 Jan 21;58(4):1174-1177. doi: 10.1002/anie.201812822. Epub 2018 Dec 20. [PubMed:30520199 ]
  5. Pritchett BP, Kikuchi J, Numajiri Y, Stoltz BM: A FISCHER INDOLIZATION STRATEGY TOWARD THE TOTAL SYNTHESIS OF (-)-GONIOMITINE. Heterocycles. 2017;95(2):1245-1253. doi: 10.3987/COM-16-S(S)80. Epub 2017 Feb 15. [PubMed:28706345 ]
  6. Li H, Cheng P, Jiang L, Yang JL, Zu L: Bio-Inspired Fragmentations: Rapid Assembly of Indolones, 2-Quinolinones, and (-)-Goniomitine. Angew Chem Int Ed Engl. 2017 Mar 1;56(10):2754-2757. doi: 10.1002/anie.201611830. Epub 2017 Jan 27. [PubMed:28128515 ]
  7. Vellucci JK, Beaudry CM: Total Synthesis of (+/-)-Goniomitine via Radical Translocation. Org Lett. 2015 Sep 18;17(18):4558-60. doi: 10.1021/acs.orglett.5b02277. Epub 2015 Sep 8. [PubMed:26348647 ]
  8. Wagnieres O, Xu Z, Wang Q, Zhu J: Unified strategy to monoterpene indole alkaloids: total syntheses of (+/-)-goniomitine, (+/-)-1,2-dehydroaspidospermidine, (+/-)-aspidospermidine, (+/-)-vincadifformine, and (+/-)-kopsihainanine A. J Am Chem Soc. 2014 Oct 22;136(42):15102-8. doi: 10.1021/ja509329x. Epub 2014 Oct 13. [PubMed:25270053 ]
  9. Zhou B, Du J, Yang Y, Li Y: Rhodium(III)-catalyzed intramolecular redox-neutral annulation of tethered alkynes: formal total synthesis of (+/-)-goniomitine. Chemistry. 2014 Sep 26;20(40):12768-72. doi: 10.1002/chem.201403973. Epub 2014 Aug 21. [PubMed:25145612 ]
  10. Zhou S, Jia Y: Total synthesis of (-)-goniomitine. Org Lett. 2014 Jun 20;16(12):3416-8. doi: 10.1021/ol501341b. Epub 2014 Jun 2. [PubMed:24885528 ]