NP-MRD: Showing NP-Card for (+)-Crooksidine (NP0066875)

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Record Information

Version

2.0

Created at

2022-04-28 11:06:32 UTC

Updated at

2022-04-28 11:06:32 UTC

NP-MRD ID

NP0066875

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Crooksidine

Description

Crooksidine belongs to the class of organic compounds known as tryptamines and derivatives. Tryptamines and derivatives are compounds containing the tryptamine backbone, which is structurally characterized by an indole ring substituted at the 3-position by an ethanamine. (+)-Crooksidine is found in Haplophyton crooksii. Based on a literature review very few articles have been published on crooksidine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 48 50  0  0  0  0  0  0  0  0999 V2000
    3.9795    1.5022    0.1126 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3366    0.5266    1.1784 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6222   -0.8046    1.0545 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9052   -1.5129   -0.2155 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7678   -1.7585   -1.1344 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4176   -1.8211   -0.4234 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3079   -0.5692    0.2734 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0368   -0.3157    0.6546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8635   -0.0168   -0.5817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2826    0.2459   -0.2464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3100   -0.6208    0.0451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3016   -2.0487    0.0899 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2189   -2.9984   -0.1584 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4491   -2.5984    0.4056 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4037    0.1742    0.2933 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0866    1.4578    0.1667 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8553    2.6120    0.3202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3026    3.8536    0.1359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9601    3.9511   -0.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2001    2.7911   -0.3581 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7743    1.5584   -0.1695 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1716   -0.6199    1.4034 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8021    1.6115   -0.6549 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9201    2.5160    0.5765 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9954    1.3318   -0.3666 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4550    0.3826    1.1217 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1531    0.9706    2.1755 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0509   -1.4358    1.8918 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6894   -0.9607   -0.8200 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4106   -2.5112   -0.0427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8886   -2.7192   -1.6792 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6383   -0.9812   -1.9164 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4261   -2.6548    0.3309 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6849   -2.0284   -1.1926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0939    0.6033    1.3043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4720   -1.1540    1.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7775   -0.7748   -1.3639 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4537    0.9606   -1.0295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6479   -2.7839   -1.0505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6538   -4.0351   -0.3280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -3.0958    0.7890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3297   -0.2020    0.5396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8891    2.5298    0.5832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8687    4.7717    0.2448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5105    4.9030   -0.3549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1499    2.8642   -0.6246 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0684    0.3339    1.9775 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8147   -1.4299    2.1003 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
  7 22  1  0
 22  3  1  0
 21 10  1  0
 21 16  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  0
  2 27  1  0
  3 28  1  1
  4 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  6 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 15 42  1  0
 17 43  1  0
 18 44  1  0
 19 45  1  0
 20 46  1  0
 13 39  1  0
 13 40  1  0
 13 41  1  0
 22 47  1  0
 22 48  1  0
M  END


  Mrv1652304282213062D          

 22 24  0  0  1  0            999 V2000
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838    0.0709    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -0.1006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -0.8853    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -1.4984    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1190   -2.2830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6880   -2.4545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2400   -1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9851   -1.0568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0470   -2.0129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3020   -2.7976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1712    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5837    0.8085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5837    2.2374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 16 18  1  1  0  0  0
 18 19  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0066875

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H]1CCCN(CCC2=C(NC3=CC=CC=C23)C(C)=O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H26N2O/c1-3-15-7-6-11-21(13-15)12-10-17-16-8-4-5-9-18(16)20-19(17)14(2)22/h4-5,8-9,15,20H,3,6-7,10-13H2,1-2H3/t15-/m1/s1

> <INCHI_KEY>
VUNIXNUFSKOHRO-OAHLLOKOSA-N

> <FORMULA>
C19H26N2O

> <MOLECULAR_WEIGHT>
298.43

> <EXACT_MASS>
298.204513465

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
35.91784479974958

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-(3-{2-[(3R)-3-ethylpiperidin-1-yl]ethyl}-1H-indol-2-yl)ethan-1-one

> <ALOGPS_LOGP>
4.05

> <JCHEM_LOGP>
3.4396220463333336

> <ALOGPS_LOGS>
-4.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
18.34082969215466

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.484835159119335

> <JCHEM_PKA_STRONGEST_BASIC>
9.017020924009193

> <JCHEM_POLAR_SURFACE_AREA>
36.1

> <JCHEM_REFRACTIVITY>
91.9371

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.83e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-(3-{2-[(3R)-3-ethylpiperidin-1-yl]ethyl}-1H-indol-2-yl)ethanone

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       2.126   4.089   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.126   1.597   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.650   0.132   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.143  -0.188   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0      -0.333  -1.652   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       0.698  -2.797   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.222  -4.262   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.284  -4.582   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.315  -3.437   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.839  -1.973   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.821  -3.757   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.297  -5.222   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.320   2.843   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.090   1.509   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -1.090   4.177   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8                                                       
CONECT    8    7    9   20                                                  
CONECT    9    8    4   10                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16   12                                                       
CONECT   18   16   19                                                       
CONECT   19   18                                                            
CONECT   20    8   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₆N₂O

Average Mass

298.4300 Da

Monoisotopic Mass

298.20451 Da

IUPAC Name

1-(3-{2-[(3R)-3-ethylpiperidin-1-yl]ethyl}-1H-indol-2-yl)ethan-1-one

Traditional Name

1-(3-{2-[(3R)-3-ethylpiperidin-1-yl]ethyl}-1H-indol-2-yl)ethanone

CAS Registry Number

Not Available

SMILES

CC[C@@H]1CCCN(CCC2=C(NC3=CC=CC=C23)C(C)=O)C1

InChI Identifier

InChI=1S/C19H26N2O/c1-3-15-7-6-11-21(13-15)12-10-17-16-8-4-5-9-18(16)20-19(17)14(2)22/h4-5,8-9,15,20H,3,6-7,10-13H2,1-2H3/t15-/m1/s1

InChI Key

VUNIXNUFSKOHRO-OAHLLOKOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Haplophyton crooksii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tryptamines and derivatives. Tryptamines and derivatives are compounds containing the tryptamine backbone, which is structurally characterized by an indole ring substituted at the 3-position by an ethanamine.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Tryptamines and derivatives

Direct Parent

Tryptamines and derivatives

Alternative Parents

Substituents

Tryptamine
3-alkylindole
Indole
Aryl ketone
Aryl alkyl ketone
Aralkylamine
Benzenoid
Piperidine
Substituted pyrrole
Heteroaromatic compound
Pyrrole
Ketone
Tertiary aliphatic amine
Tertiary amine
Azacycle
Amine
Organic oxygen compound
Organic oxide
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.05	ALOGPS
logP	3.44	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	13.48	ChemAxon
pKa (Strongest Basic)	9.02	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	36.1 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	91.94 m³·mol⁻¹	ChemAxon
Polarizability	35.92 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00024527

Chemspider ID

9209045

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11033871

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (+)-Crooksidine (NP0066875)

MOL for NP0066875 ((+)-Crooksidine)

3D MOL for NP0066875 ((+)-Crooksidine)

3D SDF for NP0066875 ((+)-Crooksidine)

3D-SDF for NP0066875 ((+)-Crooksidine)

PDB for NP0066875 ((+)-Crooksidine)

3D PDB for NP0066875 ((+)-Crooksidine)

SMILES for NP0066875 ((+)-Crooksidine)

INCHI for NP0066875 ((+)-Crooksidine)

Structure for NP0066875 ((+)-Crooksidine)

3D Structure for NP0066875 ((+)-Crooksidine)