NP-MRD: Showing NP-Card for Arcyriarubin B (NP0066441)

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Record Information

Version

2.0

Created at

2022-04-28 10:41:40 UTC

Updated at

2022-04-28 10:41:40 UTC

NP-MRD ID

NP0066441

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Arcyriarubin B

Description

Bisindolyl deriv. 10 Belongs to the class of organic compounds known as hydroxyindoles. These are organic compounds containing an indole moiety that carries a hydroxyl group. Bisindolyl deriv. Arcyriarubin B is found in Arcyria denudata, Arcyria denudate, Arcyria nutans, Arcyria obvelata and Metatrichia floriformis. 10 Is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231519492D          

 26 30  0  0  0  0            999 V2000
   -1.0829    1.3259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9113    0.5189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1267    0.2640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0448   -0.5430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -1.9200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3529   -2.1750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8378   -1.5075    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3529   -0.8401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5244   -0.0331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -2.4049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3687   -2.8174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1937   -2.8174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -3.4849    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -3.2299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -3.7149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  2  0  0  0  0
  2 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 18 26  1  0  0  0  0
 21 26  1  0  0  0  0
M  END

     RDKit          3D

 39 43  0  0  0  0  0  0  0  0999 V2000
    2.6299   -1.2084   -2.8437 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4208   -1.1816   -2.5199 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3470   -1.2542   -3.4276 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8417   -1.1938   -2.6627 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0385   -1.2272   -3.0674 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4288   -1.0799   -1.2378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3966   -0.9962   -0.1648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5766   -1.7840    0.9354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6555   -1.3466    1.6320 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2009   -0.2865    1.0247 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2871    0.4979    1.3369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5940    1.5383    0.4926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6779    2.3646    0.7549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8402    1.7903   -0.6313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7469    0.9905   -0.9341 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4303   -0.0517   -0.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8784   -1.0711   -1.1320 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7594   -0.9920    0.0187 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8505   -1.7261    1.1636 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8445   -1.2254    1.9700 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4054   -0.1719    1.3645 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4208    0.7001    1.6997 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8055    1.7342    0.8659 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1631    1.9019   -0.3276 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1358    1.0170   -0.6629 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7552   -0.0115    0.1675 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -1.3385   -4.4849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9889   -2.6394    1.2316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0038   -1.7844    2.5200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9150    0.3496    2.2022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9361    3.1334    0.1665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0837    2.6201   -1.3067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1546    1.1810   -1.7993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2518   -2.5863    1.4123 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1435   -1.5777    2.9043 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9535    0.6027    2.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6002    2.4316    1.1059 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4110    2.6868   -1.0265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6469    1.1945   -1.6197 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
 16 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6 17  2  0
 17  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 25 26  2  0
 10 11  2  0
 11 12  1  0
  7 16  1  0
  4  6  1  0
 26 18  1  0
 26 21  1  0
 13 31  1  0
 14 32  1  0
 15 33  1  0
  9 29  1  0
  8 28  1  0
  3 27  1  0
 19 34  1  0
 20 35  1  0
 22 36  1  0
 23 37  1  0
 24 38  1  0
 25 39  1  0
 11 30  1  0
M  END


  Mrv1533004231519492D          

 26 30  0  0  0  0            999 V2000
   -1.0829    1.3259    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9113    0.5189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1267    0.2640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0448   -0.5430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -1.0950    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -1.9200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3529   -2.1750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8378   -1.5075    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3529   -0.8401    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5244   -0.0331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -2.4049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3687   -2.8174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1937   -2.8174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -3.4849    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0992   -3.2299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5683   -3.7149    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  2  0  0  0  0
  2 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 11 16  1  0  0  0  0
 16 17  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 18 26  1  0  0  0  0
 21 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0066441

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C2C(NC=C2C2=C(C(=O)NC2=O)C2=CNC3=CC=CC=C23)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C20H13N3O3/c24-10-5-6-12-14(9-22-16(12)7-10)18-17(19(25)23-20(18)26)13-8-21-15-4-2-1-3-11(13)15/h1-9,21-22,24H,(H,23,25,26)

> <INCHI_KEY>
FPFDAPLHFVEXKC-UHFFFAOYSA-N

> <FORMULA>
C20H13N3O3

> <MOLECULAR_WEIGHT>
343.342

> <EXACT_MASS>
343.095691291

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
35.396297302792796

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-(6-hydroxy-1H-indol-3-yl)-4-(1H-indol-3-yl)-2,5-dihydro-1H-pyrrole-2,5-dione

> <ALOGPS_LOGP>
3.34

> <JCHEM_LOGP>
2.5942313300000004

> <ALOGPS_LOGS>
-4.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.926648993685962

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.303067041513167

> <JCHEM_PKA_STRONGEST_BASIC>
-4.880689320991306

> <JCHEM_POLAR_SURFACE_AREA>
97.97999999999999

> <JCHEM_REFRACTIVITY>
96.40950000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.71e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(6-hydroxy-1H-indol-3-yl)-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  O   UNK     0      -2.021   2.475   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.701   0.969   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.237   0.493   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.084  -1.014   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.061  -2.044   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.061  -3.584   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.525  -4.060   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0      -3.431  -2.814   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.525  -1.568   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.846  -0.062   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.185  -4.489   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.555  -5.259   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.095  -5.259   0.000  0.00  0.00           O+0
HETATM   15  N   UNK     0       1.650  -6.505   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       0.185  -6.029   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.061  -6.934   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    9                                                  
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    5   10                                                  
CONECT   10    9    2                                                       
CONECT   11    6   12   16                                                  
CONECT   12   11   13   18                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16                                                            
CONECT   18   12   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   26                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   18   21                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₁₃N₃O₃

Average Mass

343.3420 Da

Monoisotopic Mass

343.09569 Da

IUPAC Name

3-(6-hydroxy-1H-indol-3-yl)-4-(1H-indol-3-yl)-2,5-dihydro-1H-pyrrole-2,5-dione

Traditional Name

3-(6-hydroxy-1H-indol-3-yl)-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione

CAS Registry Number

Not Available

SMILES

OC1=CC=C2C(NC=C2C2=C(C(=O)NC2=O)C2=CNC3=CC=CC=C23)=C1

InChI Identifier

InChI=1S/C20H13N3O3/c24-10-5-6-12-14(9-22-16(12)7-10)18-17(19(25)23-20(18)26)13-8-21-15-4-2-1-3-11(13)15/h1-9,21-22,24H,(H,23,25,26)

InChI Key

FPFDAPLHFVEXKC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arcyria denudata	Amoebozoa	KNApSAcK
Arcyria denudate	Amoebozoa	KNApSAcK
Arcyria nutans	Amoebozoa	KNApSAcK
Arcyria obvelata	LOTUS Database	35616633
Metatrichia floriformis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxyindoles. These are organic compounds containing an indole moiety that carries a hydroxyl group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Hydroxyindoles

Direct Parent

Hydroxyindoles

Alternative Parents

Substituents

Hydroxyindole
Indole
1-hydroxy-2-unsubstituted benzenoid
Phenol
Maleimide
Substituted pyrrole
Benzenoid
Carboxylic acid imide
Dicarboximide
Carboxylic acid imide, n-unsubstituted
Pyrrole
Pyrroline
Heteroaromatic compound
Carboxylic acid derivative
Azacycle
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.34	ALOGPS
logP	2.59	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	9.3	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	97.98 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	96.41 m³·mol⁻¹	ChemAxon
Polarizability	35.4 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5327725

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Arcyriarubin B (NP0066441)

MOL for NP0066441 (Arcyriarubin B)

3D MOL for NP0066441 (Arcyriarubin B)

3D SDF for NP0066441 (Arcyriarubin B)

3D-SDF for NP0066441 (Arcyriarubin B)

PDB for NP0066441 (Arcyriarubin B)

3D PDB for NP0066441 (Arcyriarubin B)

SMILES for NP0066441 (Arcyriarubin B)

INCHI for NP0066441 (Arcyriarubin B)

Structure for NP0066441 (Arcyriarubin B)

3D Structure for NP0066441 (Arcyriarubin B)