NP-MRD: Showing NP-Card for Clerodiol (NP0066186)

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Record Information

Version

2.0

Created at

2022-04-28 10:20:46 UTC

Updated at

2022-04-28 10:20:46 UTC

NP-MRD ID

NP0066186

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Clerodiol

Description

[(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-decahydronaphthalen-4a-yl]methyl acetate belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations. Clerodiol is found in Clerodendron brachyanthum. Based on a literature review very few articles have been published on [(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-decahydronaphthalen-4a-yl]methyl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282212202D          

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M  END

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  Mrv1652304282212202D          

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  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  8 15  1  6  0  0  0
  7 16  1  6  0  0  0
  7 17  1  1  0  0  0
 17 18  1  0  0  0  0
 19 18  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  1  6  0  0  0
 17 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 19 24  1  0  0  0  0
 23 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
  4 28  1  6  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
  3 33  1  6  0  0  0
  3 34  1  1  0  0  0
 34 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0066186

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCO[C@H]1C[C@@H]2C[C@H](O[C@@H]2O1)[C@@]1(C)[C@H](C)C[C@H](OC(C)=O)[C@]2(COC(C)=O)[C@@H]1CCC[C@]2(O)CO

> <INCHI_IDENTIFIER>
InChI=1S/C26H42O9/c1-6-31-22-12-18-11-20(34-23(18)35-22)24(5)15(2)10-21(33-17(4)29)26(14-32-16(3)28)19(24)8-7-9-25(26,30)13-27/h15,18-23,27,30H,6-14H2,1-5H3/t15-,18+,19-,20+,21+,22-,23-,24+,25+,26+/m1/s1

> <INCHI_KEY>
SNBKLZSUDKLRJT-YVXNCJKZSA-N

> <FORMULA>
C26H42O9

> <MOLECULAR_WEIGHT>
498.613

> <EXACT_MASS>
498.282882932

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
54.453065889712526

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-decahydronaphthalen-4a-yl]methyl acetate

> <ALOGPS_LOGP>
1.79

> <JCHEM_LOGP>
1.5054389810000002

> <ALOGPS_LOGS>
-3.73

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.243787022114624

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.406934086592692

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0831583305518047

> <JCHEM_POLAR_SURFACE_AREA>
120.75000000000003

> <JCHEM_REFRACTIVITY>
124.39449999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.37e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-hexahydro-2H-naphthalen-4a-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -6.919   7.128   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -8.278   6.405   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -8.332   4.866   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -7.026   4.050   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.666   4.773   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.613   6.312   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.360   3.957   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.414   2.418   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.774   1.695   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -7.080   2.511   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -8.439   1.788   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -8.493   0.249   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -9.853  -0.474   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -7.187  -0.567   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.108   1.602   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.499   5.234   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.820   3.957   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.915   2.711   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.450   3.187   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.450   4.727   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.915   5.203   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       1.014   5.203   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.919   3.957   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.014   2.711   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.459   3.957   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       4.229   2.623   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.769   2.623   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -8.386   3.327   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -9.692   4.143   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0     -11.051   3.420   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0     -11.105   1.881   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0     -12.357   4.236   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -9.609   5.727   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -9.872   4.866   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0     -10.642   6.200   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   33   34                                             
CONECT    4    3    5   10   28                                             
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   16   17                                             
CONECT    8    7    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9    4   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    8                                                            
CONECT   16    7                                                            
CONECT   17    7   18   21                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20   17                                                       
CONECT   22   20   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23   19                                                       
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28    4   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33    3                                                            
CONECT   34    3   35                                                       
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Value	Source
[(1S,2R,4S,4AR,5R,8ar)-1-[(2S,3as,5R,6ar)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-decahydronaphthalen-4a-yl]methyl acetic acid	Generator

Chemical Formula

C₂₆H₄₂O₉

Average Mass

498.6130 Da

Monoisotopic Mass

498.28288 Da

IUPAC Name

[(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-decahydronaphthalen-4a-yl]methyl acetate

Traditional Name

[(1S,2R,4S,4aR,5R,8aR)-1-[(2S,3aS,5R,6aR)-5-ethoxy-hexahydrofuro[2,3-b]furan-2-yl]-4-(acetyloxy)-5-hydroxy-5-(hydroxymethyl)-1,2-dimethyl-hexahydro-2H-naphthalen-4a-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

CCO[C@H]1C[C@@H]2C[C@H](O[C@@H]2O1)[C@@]1(C)[C@H](C)C[C@H](OC(C)=O)[C@]2(COC(C)=O)[C@@H]1CCC[C@]2(O)CO

InChI Identifier

InChI=1S/C26H42O9/c1-6-31-22-12-18-11-20(34-23(18)35-22)24(5)15(2)10-21(33-17(4)29)26(14-32-16(3)28)19(24)8-7-9-25(26,30)13-27/h15,18-23,27,30H,6-14H2,1-5H3/t15-,18+,19-,20+,21+,22-,23-,24+,25+,26+/m1/s1

InChI Key

SNBKLZSUDKLRJT-YVXNCJKZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clerodendron brachyanthum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Colensane and clerodane diterpenoids

Alternative Parents

Substituents

Clerodane diterpenoid
Furofuran
Dicarboxylic acid or derivatives
Tetrahydrofuran
Tertiary alcohol
Cyclic alcohol
Carboxylic acid ester
1,2-diol
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.79	ALOGPS
logP	1.51	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	13.41	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	120.75 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	124.39 m³·mol⁻¹	ChemAxon
Polarizability	54.45 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10219062

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21595056

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Clerodiol (NP0066186)

MOL for NP0066186 (Clerodiol)

3D MOL for NP0066186 (Clerodiol)

3D SDF for NP0066186 (Clerodiol)

3D-SDF for NP0066186 (Clerodiol)

PDB for NP0066186 (Clerodiol)

3D PDB for NP0066186 (Clerodiol)

SMILES for NP0066186 (Clerodiol)

INCHI for NP0066186 (Clerodiol)

Structure for NP0066186 (Clerodiol)

3D Structure for NP0066186 (Clerodiol)