NP-MRD: Showing NP-Card for 12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol (NP0065067)

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Record Information

Version

2.0

Created at

2022-04-28 09:21:01 UTC

Updated at

2022-04-28 09:21:01 UTC

NP-MRD ID

NP0065067

Secondary Accession Numbers

None

Natural Product Identification

Common Name

12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol

Description

(2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. 12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol is found in Lasiolaena morii. Based on a literature review very few articles have been published on (2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282211212D          

 28 27  0  0  1  0            999 V2000
    6.7618    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    6.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    6.3789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3329    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    3.0789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1895    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    0.1914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    6.7914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 10 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  6 25  1  0  0  0  0
  5 26  1  6  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
M  END

     RDKit          3D

 68 67  0  0  0  0  0  0  0  0999 V2000
   -7.0623    1.3241   -0.8101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1460    0.7216   -0.0510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9742    0.1142   -0.7301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7134    0.7639   -0.2419 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6046    0.5584    1.1283 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5084    0.2480   -0.9651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4344    0.4163   -2.4213 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5651   -0.3369   -0.2484 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3353   -0.8720   -0.9261 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8249   -0.1571   -0.3403 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1825   -0.5254   -0.8282 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1606    0.3713   -0.0521 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5643    0.1274   -0.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5360    1.0087    0.2641 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7019    0.9986    1.7036 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9073    0.6232    2.1694 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0762    0.2210    1.4093 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3804   -1.1103    1.8210 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7045    1.4428    2.7150 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3071    2.7741    2.4458 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3764   -0.4683   -2.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5173   -1.3529   -2.9622 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4906   -2.7219   -2.8325 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5322   -3.5835   -3.5962 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3037   -3.2623   -2.0418 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3592    0.6821    1.4022 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4526   -0.7166    1.9634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6798    1.3702    1.7440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8934    1.3469   -1.8840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9613    1.7872   -0.3938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9152   -0.9844   -0.5465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0705    0.2096   -1.8331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8413    1.8636   -0.4419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6551   -0.4226    1.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5515   -0.5719   -2.8978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4705    0.8373   -2.7701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2202    1.1072   -2.7828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6664   -0.4357    0.8215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4606   -0.7717   -2.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2753   -1.9442   -0.6794 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8182   -0.4070    0.7680 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7051    0.9539   -0.3425 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3685   -1.5802   -0.4639 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0057    0.0963    1.0032 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9079    1.4424   -0.1686 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7584    0.2678   -1.5288 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8399   -0.9422   -0.1603 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5033    1.1051   -0.3010 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1054    2.0811    0.0510 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0179    0.6194    3.2726 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0280    0.1673    0.3349 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9465    0.8555    1.7649 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4966   -1.5629    1.8842 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1921    1.5234    3.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8692    0.7860    2.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3248    2.8750    2.5759 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4029   -0.7332   -2.6223 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0886    0.5548   -2.6370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4442   -3.0444   -3.7424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3327   -4.4687   -2.9566 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9603   -3.9467   -4.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5917    1.3039    1.9536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1363   -0.7350    3.0240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8635   -1.4458    1.3785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5128   -1.0897    1.9479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5396    0.8497    1.3025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7497    1.3636    2.8752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5834    2.4309    1.4867 H   0  0  0  0  0  0  0  0  0  0  0  0
 27 26  1  0
 26 28  1  0
 26  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 19  1  0
 19 20  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 11 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 27 63  1  0
 27 64  1  0
 27 65  1  0
 26 62  1  1
 28 66  1  0
 28 67  1  0
 28 68  1  0
  1 29  1  0
  1 30  1  0
  3 31  1  0
  3 32  1  0
  4 33  1  1
  5 34  1  0
  7 35  1  0
  7 36  1  0
  7 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  1
 12 44  1  0
 12 45  1  0
 13 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 19 54  1  0
 19 55  1  0
 20 56  1  0
 16 50  1  0
 17 51  1  0
 17 52  1  0
 18 53  1  0
 21 57  1  0
 21 58  1  0
 24 59  1  0
 24 60  1  0
 24 61  1  0
M  END


  Mrv1652304282211212D          

 28 27  0  0  1  0            999 V2000
    6.7618    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    8.0289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    6.7914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    6.3789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3329    5.5539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    4.3164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    3.9039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    3.0789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1895    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    0.1914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605   -0.6336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    5.1414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    6.7914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618    8.8539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763    7.6164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 10 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  6 25  1  0  0  0  0
  5 26  1  6  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0065067

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(=C)C[C@@H](O)C(\C)=C\CC[C@H](CCC\C(CO)=C/CO)COC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C23H40O5/c1-17(2)19(4)14-23(27)18(3)8-6-10-22(16-28-20(5)26)11-7-9-21(15-25)12-13-24/h8,12,17,22-25,27H,4,6-7,9-11,13-16H2,1-3,5H3/b18-8+,21-12+/t22-,23-/m1/s1

> <INCHI_KEY>
SSWGQMOHXYFBBU-AZUJWKMPSA-N

> <FORMULA>
C23H40O5

> <MOLECULAR_WEIGHT>
396.568

> <EXACT_MASS>
396.287574388

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
46.77081549509004

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate

> <ALOGPS_LOGP>
3.65

> <JCHEM_LOGP>
3.143162394

> <ALOGPS_LOGS>
-4.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.762113940598002

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.022508861926912

> <JCHEM_PKA_STRONGEST_BASIC>
-1.2686671897530637

> <JCHEM_POLAR_SURFACE_AREA>
86.99

> <JCHEM_REFRACTIVITY>
115.70679999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.94e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      12.622  14.987   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.288  14.217   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.955  14.987   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.288  12.677   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.955  11.907   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.955  10.367   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.621   9.597   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.621   8.057   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.287   7.287   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.287   5.747   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.954   4.977   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.620   1.127   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.954   0.357   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.287   1.127   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       8.621   0.357   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.286   0.357   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.286  -1.183   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.621   4.977   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.621   3.437   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.288   3.437   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       9.955   1.127   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.288   9.597   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.621  12.677   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      12.622  16.527   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.956  14.217   0.000  0.00  0.00           C+0
CONECT    1    2   27   28                                                  
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   26                                                  
CONECT    6    5    7   25                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   20                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   18                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   14   19                                                       
CONECT   19   18                                                            
CONECT   20   10   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25    6                                                            
CONECT   26    5                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   54    0
END

View in JSmol

Synonyms

Value	Source
(2S,5E,7R)-7-Hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetic acid	Generator

Chemical Formula

C₂₃H₄₀O₅

Average Mass

396.5680 Da

Monoisotopic Mass

396.28757 Da

IUPAC Name

(2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate

Traditional Name

(2S,5E,7R)-7-hydroxy-2-[(4E)-6-hydroxy-4-(hydroxymethyl)hex-4-en-1-yl]-6,10-dimethyl-9-methylideneundec-5-en-1-yl acetate

CAS Registry Number

Not Available

SMILES

CC(C)C(=C)C[C@@H](O)C(\C)=C\CC[C@H](CCC\C(CO)=C/CO)COC(C)=O

InChI Identifier

InChI=1S/C23H40O5/c1-17(2)19(4)14-23(27)18(3)8-6-10-22(16-28-20(5)26)11-7-9-21(15-25)12-13-24/h8,12,17,22-25,27H,4,6-7,9-11,13-16H2,1-3,5H3/b18-8+,21-12+/t22-,23-/m1/s1

InChI Key

SSWGQMOHXYFBBU-AZUJWKMPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lasiolaena morii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Long chain fatty alcohol
Fatty alcohol ester
Fatty alcohol
Fatty acyl
Secondary alcohol
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.65	ALOGPS
logP	3.14	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	15.02	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	115.71 m³·mol⁻¹	ChemAxon
Polarizability	46.77 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163106032

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol (NP0065067)

MOL for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

3D MOL for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

3D SDF for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

3D-SDF for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

PDB for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

3D PDB for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

SMILES for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

INCHI for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

Structure for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)

3D Structure for NP0065067 (12,20-Dihydroxy-19-acetoxy-14-methylenegeranylnerol)