NP-MRD: Showing NP-Card for Clibadic acid (NP0065059)

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Record Information

Version

2.0

Created at

2022-04-28 09:20:38 UTC

Updated at

2022-04-28 09:20:38 UTC

NP-MRD ID

NP0065059

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Clibadic acid

Description

(2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. Clibadic acid is found in Clibadium pittierii. Based on a literature review very few articles have been published on (2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282211202D          

 31 30  0  0  0  0            999 V2000
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6677    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8112    3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8112    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    3.6020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6677    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 14 21  1  0  0  0  0
 10 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
  6 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
M  END

     RDKit          3D

 69 68  0  0  0  0  0  0  0  0999 V2000
   -7.2779    0.4018   -1.4393 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6343    0.7976   -0.3665 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1687    0.5567   -0.2140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6942   -0.1389   -1.4257 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1836   -0.4717   -1.3904 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4987   -0.1405   -0.3577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1392   -0.2489    0.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0003   -0.7987   -0.6261 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.6655    0.2653 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2644    0.0409   -0.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5040    0.2306    0.5920 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7380   -0.3976   -0.0142 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1225    0.0704   -1.3324 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2484   -0.0980   -2.5278 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2911    0.6576   -1.5532 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3441    0.9284   -0.5789 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5264    2.3579   -0.5763 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4560    2.9450    0.2393 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6970    4.4120    0.2925 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1429    2.2013    0.9839 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2711   -1.3809    1.5362 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0663   -2.7625    1.2199 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0186   -3.7429    2.1988 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8105   -5.1740    1.9178 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1646   -3.3599    3.3880 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6624   -1.1517   -2.5299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5317   -1.3833   -3.4647 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4282   -1.5842   -2.7837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3717    1.4991    0.7159 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.8062    1.7415    0.3667 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2373    0.6901    1.9661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8079   -0.1146   -2.2676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3572    0.5687   -1.5773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6641    1.5423   -0.0320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0884   -0.1169    0.6833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1956   -1.1104   -1.5292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8750    0.4422   -2.3595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1857    0.3800    0.4310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8480    0.8439    0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1306   -0.7893    1.1261 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2519   -0.2604   -1.5325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0346   -1.9155   -0.7313 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2004    0.5471   -1.1788 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4260    0.0559    1.6709 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7279    1.3649    0.5497 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.5096   -0.0711 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5406   -0.3018    0.7409 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5423   -0.9260   -2.4436 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9139   -0.3924   -3.4056 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8227    0.8705   -2.8557 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5340    0.9980   -2.5893 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1972    0.6467    0.4468 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2878    0.4560   -0.9726 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5585    4.8075   -0.7323 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9600    4.8982    0.9946 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7213    4.6288    0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812   -1.2637    2.1505 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4389   -1.1105    2.2429 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4933   -5.8193    2.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2391   -5.5008    2.1462 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9787   -5.4416    0.8607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0081   -1.7159   -3.6930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9062    2.4976    0.8931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2953    0.7541    0.2476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9384    2.2785   -0.5877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2668    2.2932    1.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2445    0.5707    2.4126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5441    1.1693    2.6788 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9047   -0.3567    1.7264 H   0  0  0  0  0  0  0  0  0  0  0  0
 30 29  1  0
 29 31  1  0
 29  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  2  0
  5 26  1  0
 26 28  1  0
 26 27  2  0
 30 64  1  0
 30 65  1  0
 30 66  1  0
 29 63  1  1
 31 67  1  0
 31 68  1  0
 31 69  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  3 35  1  0
  4 36  1  0
  4 37  1  0
  6 38  1  0
  7 39  1  0
  7 40  1  0
  8 41  1  0
  8 42  1  0
 21 57  1  0
 21 58  1  0
 24 59  1  0
 24 60  1  0
 24 61  1  0
 10 43  1  0
 11 44  1  0
 11 45  1  0
 12 46  1  0
 12 47  1  0
 14 48  1  0
 14 49  1  0
 14 50  1  0
 15 51  1  0
 16 52  1  0
 16 53  1  0
 19 54  1  0
 19 55  1  0
 19 56  1  0
 28 62  1  0
M  END


  Mrv1652304282211202D          

 31 30  0  0  0  0            999 V2000
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6677    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3822    3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8112    3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0967    4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8112    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    3.1895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    3.6020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6677    3.6020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    2.3645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 14 21  1  0  0  0  0
 10 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
  6 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0065059

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(=C)CC\C(=C\CC\C(COC(C)=O)=C\CC\C(C)=C/COC(C)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C25H38O6/c1-18(2)20(4)13-14-24(25(28)29)12-8-11-23(17-31-22(6)27)10-7-9-19(3)15-16-30-21(5)26/h10,12,15,18H,4,7-9,11,13-14,16-17H2,1-3,5-6H3,(H,28,29)/b19-15-,23-10-,24-12-

> <INCHI_KEY>
IRHJCFCBUBTOMP-ZVVWAPISSA-N

> <FORMULA>
C25H38O6

> <MOLECULAR_WEIGHT>
434.573

> <EXACT_MASS>
434.266838944

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
49.534940307300246

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid

> <ALOGPS_LOGP>
4.89

> <JCHEM_LOGP>
4.959936875666666

> <ALOGPS_LOGS>
-5.10

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.7315071142251455

> <JCHEM_PKA_STRONGEST_BASIC>
-6.703693273196154

> <JCHEM_POLAR_SURFACE_AREA>
89.9

> <JCHEM_REFRACTIVITY>
124.05829999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.46e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310  -0.206   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.645   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.978   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.312   1.334   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.646   2.104   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.979   1.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.313   2.104   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.647   1.334   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.980   2.104   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      16.980   3.644   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.647   4.414   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      15.647   5.954   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      16.980   6.724   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      18.314   5.954   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      16.980   8.264   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      18.314   1.334   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.646   3.644   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      12.979   4.414   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      12.979   5.954   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      11.646   6.724   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      14.313   6.724   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.311   3.644   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       7.645   4.414   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       4.977   4.414   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.976   3.644   0.000  0.00  0.00           C+0
CONECT    1    2   30   31                                                  
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   22                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   21                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   14                                                            
CONECT   22   10   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24                                                            
CONECT   27    6   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   60    0
END

View in JSmol

Synonyms

Value	Source
(2Z,6Z,10Z)-12-(Acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoate	Generator

Chemical Formula

C₂₅H₃₈O₆

Average Mass

434.5730 Da

Monoisotopic Mass

434.26684 Da

IUPAC Name

(2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid

Traditional Name

(2Z,6Z,10Z)-12-(acetyloxy)-6-[(acetyloxy)methyl]-10-methyl-2-(4-methyl-3-methylidenepentyl)dodeca-2,6,10-trienoic acid

CAS Registry Number

Not Available

SMILES

CC(C)C(=C)CC\C(=C\CC\C(COC(C)=O)=C\CC\C(C)=C/COC(C)=O)C(O)=O

InChI Identifier

InChI=1S/C25H38O6/c1-18(2)20(4)13-14-24(25(28)29)12-8-11-23(17-31-22(6)27)10-7-9-19(3)15-16-30-21(5)26/h10,12,15,18H,4,7-9,11,13-14,16-17H2,1-3,5-6H3,(H,28,29)/b19-15-,23-10-,24-12-

InChI Key

IRHJCFCBUBTOMP-ZVVWAPISSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clibadium pittierii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Tricarboxylic acid or derivatives
Carboxylic acid ester
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.89	ALOGPS
logP	4.96	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	4.73	ChemAxon
pKa (Strongest Basic)	-6.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	89.9 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	124.06 m³·mol⁻¹	ChemAxon
Polarizability	49.53 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00022146

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163184455

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Clibadic acid (NP0065059)

MOL for NP0065059 (Clibadic acid)

3D MOL for NP0065059 (Clibadic acid)

3D SDF for NP0065059 (Clibadic acid)

3D-SDF for NP0065059 (Clibadic acid)

PDB for NP0065059 (Clibadic acid)

3D PDB for NP0065059 (Clibadic acid)

SMILES for NP0065059 (Clibadic acid)

INCHI for NP0065059 (Clibadic acid)

Structure for NP0065059 (Clibadic acid)

3D Structure for NP0065059 (Clibadic acid)