NP-MRD: Showing NP-Card for Presilphiperfolanol (NP0064781)

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Record Information

Version

2.0

Created at

2022-04-28 09:04:01 UTC

Updated at

2022-04-28 09:04:01 UTC

NP-MRD ID

NP0064781

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Presilphiperfolanol

Description

Presilphiperfolan-8beta-ol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Presilphiperfolanol is found in Duhaldea cuspidata, Eriophyllum staechadifolium and Flourensia heterolepis. Presilphiperfolanol was first documented in 2008 (PMID: 19035644). Based on a literature review a small amount of articles have been published on presilphiperfolan-8beta-ol (PMID: 32432889) (PMID: 27529428) (PMID: 19476353).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
    3.6520    0.6011   -0.5212 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1322    0.4356   -0.6993 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5753    1.8377   -0.4026 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0459    1.8494   -0.5670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4989    0.9755    0.4688 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9207    0.5082    0.3348 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7934    1.0349    1.4783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5986    0.8664   -0.9264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8860   -1.0264    0.5698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5760   -1.3341   -0.0444 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6420   -1.4064   -1.4712 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2367   -2.4762    0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6084   -1.9609   -0.0214 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5971   -0.4696    0.3229 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2174   -0.2650    0.6719 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0660   -0.6420    2.0408 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8808    0.4371    0.5392 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1606   -0.1687   -1.1366 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9502    1.6264   -0.8155 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0020    0.1605   -1.7466 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7578    2.0044    0.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0526    2.6020   -1.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2577    2.9036   -0.3640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1529    1.6689   -1.6063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4519    1.5733    1.4343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2754    1.9726    1.8353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7836    1.3415    1.1439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8640    0.3409    2.3102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0544    1.8910   -0.7954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0200    0.8942   -1.8332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4850    0.1829   -1.0476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8578   -1.1998    1.6445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7145   -1.5075    0.0406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2112   -0.6572   -2.1135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7280   -1.4848   -1.7972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2273   -2.3910   -1.8585 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0307   -3.4419    0.0368 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3092   -2.5020    1.5884 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4278   -2.5010    0.4484 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6370   -2.0112   -1.1243 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2700   -0.3945    1.2299 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3893    0.1320    2.5850 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  1
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  6
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  1
 14  2  1  0
 15  5  1  0
 15 10  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  6
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  1
  7 26  1  0
  7 27  1  0
  7 28  1  0
  8 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 11 34  1  0
 11 35  1  0
 11 36  1  0
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
 14 41  1  1
 16 42  1  0
M  END


  Mrv1652304282211042D          

 16 18  0  0  1  0            999 V2000
    3.4764    0.3514    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6297   -0.4592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0044   -0.9973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2257   -0.7248    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0605   -0.7849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7420   -0.0239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3673    0.5143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5569    1.3172    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3792    1.3849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6977    0.6239    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0724    0.0858    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3942   -0.3840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6623    0.9427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0177   -1.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3364   -1.1803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1017    0.8895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
  1 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  6  0  0  0
  7 13  1  1  0  0  0
  5 14  1  0  0  0  0
  5 15  1  0  0  0  0
  1 16  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0064781

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@H]2C(C)(C)C[C@]3(C)CC[C@@H]1[C@@]23O

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O/c1-10-5-6-12-13(2,3)9-14(4)8-7-11(10)15(12,14)16/h10-12,16H,5-9H2,1-4H3/t10-,11+,12+,14+,15-/m1/s1

> <INCHI_KEY>
ZCRYDCBITZERMT-FUQNVFFISA-N

> <FORMULA>
C15H26O

> <MOLECULAR_WEIGHT>
222.372

> <EXACT_MASS>
222.198365457

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
27.097461982753703

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4S,7S,8R,11R)-2,2,4,8-tetramethyltricyclo[5.3.1.0^{4,11}]undecan-11-ol

> <ALOGPS_LOGP>
3.93

> <JCHEM_LOGP>
3.5033453626666664

> <ALOGPS_LOGS>
-4.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
0.3778605603759838

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
66.21849999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,7S,8R,11R)-2,2,4,8-tetramethyltricyclo[5.3.1.0^{4,11}]undecan-11-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.489   0.656   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.776  -0.857   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.608  -1.862   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.155  -1.353   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.980  -1.465   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.385  -0.045   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.552   0.960   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.906   2.459   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.441   2.585   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.036   1.165   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.868   0.160   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.602  -0.717   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.236   1.760   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.900  -3.003   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.628  -2.203   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.657   1.660   0.000  0.00  0.00           C+0
CONECT    1    2   10   16                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6   14   15                                             
CONECT    6    5    7                                                       
CONECT    7    6    8   11   13                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    1   11                                                  
CONECT   11   10    4    7   12                                             
CONECT   12   11                                                            
CONECT   13    7                                                            
CONECT   14    5                                                            
CONECT   15    5                                                            
CONECT   16    1                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   36    0
END

View in JSmol

Synonyms

Value	Source
Presilphiperfolan-8b-ol	Generator
Presilphiperfolan-8β-ol	Generator
Presilphiperfolanol	MeSH

Chemical Formula

C₁₅H₂₆O

Average Mass

222.3720 Da

Monoisotopic Mass

222.19837 Da

IUPAC Name

(1S,4S,7S,8R,11R)-2,2,4,8-tetramethyltricyclo[5.3.1.0^{4,11}]undecan-11-ol

Traditional Name

(1S,4S,7S,8R,11R)-2,2,4,8-tetramethyltricyclo[5.3.1.0^{4,11}]undecan-11-ol

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@H]2C(C)(C)C[C@]3(C)CC[C@@H]1[C@@]23O

InChI Identifier

InChI=1S/C15H26O/c1-10-5-6-12-13(2,3)9-14(4)8-7-11(10)15(12,14)16/h10-12,16H,5-9H2,1-4H3/t10-,11+,12+,14+,15-/m1/s1

InChI Key

ZCRYDCBITZERMT-FUQNVFFISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Duhaldea cuspidata	LOTUS Database	35616633
Eriophyllum staechadifolium	Plant	KNApSAcK
Flourensia heterolepis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Presilphiperfoliane sesquiterpenoid
Sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

tertiary alcohol (CHEBI:60968 )
organic tricyclic compound (CHEBI:60968 )
sesquiterpenoid (CHEBI:60968 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.93	ALOGPS
logP	3.5	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Basic)	0.38	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.22 m³·mol⁻¹	ChemAxon
Polarizability	27.1 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8950737

KEGG Compound ID

C19756

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10775424

PDB ID

Not Available

ChEBI ID

60968

Good Scents ID

Not Available

References

General References

Harms V, Schroder B, Oberhauser C, Tran CD, Winkler S, Drager G, Kirschning A: Methyl-Shifted Farnesyldiphosphate Derivatives Are Substrates for Sesquiterpene Cyclases. Org Lett. 2020 Jun 5;22(11):4360-4365. doi: 10.1021/acs.orglett.0c01345. Epub 2020 May 20. [PubMed:32432889 ]
Moraga J, Dalmais B, Izquierdo-Bueno I, Aleu J, Hanson JR, Hernandez-Galan R, Viaud M, Collado IG: Genetic and Molecular Basis of Botrydial Biosynthesis: Connecting Cytochrome P450-Encoding Genes to Biosynthetic Intermediates. ACS Chem Biol. 2016 Oct 21;11(10):2838-2846. doi: 10.1021/acschembio.6b00581. Epub 2016 Sep 1. [PubMed:27529428 ]
Wang CM, Hopson R, Lin X, Cane DE: Biosynthesis of the sesquiterpene botrydial in Botrytis cinerea. Mechanism and stereochemistry of the enzymatic formation of presilphiperfolan-8beta-ol. J Am Chem Soc. 2009 Jun 24;131(24):8360-1. doi: 10.1021/ja9021649. [PubMed:19476353 ]
Pinedo C, Wang CM, Pradier JM, Dalmais B, Choquer M, Le Pecheur P, Morgant G, Collado IG, Cane DE, Viaud M: Sesquiterpene synthase from the botrydial biosynthetic gene cluster of the phytopathogen Botrytis cinerea. ACS Chem Biol. 2008 Dec 19;3(12):791-801. doi: 10.1021/cb800225v. [PubMed:19035644 ]

Showing NP-Card for Presilphiperfolanol (NP0064781)

MOL for NP0064781 (Presilphiperfolanol)

3D MOL for NP0064781 (Presilphiperfolanol)

3D SDF for NP0064781 (Presilphiperfolanol)

3D-SDF for NP0064781 (Presilphiperfolanol)

PDB for NP0064781 (Presilphiperfolanol)

3D PDB for NP0064781 (Presilphiperfolanol)

SMILES for NP0064781 (Presilphiperfolanol)

INCHI for NP0064781 (Presilphiperfolanol)

Structure for NP0064781 (Presilphiperfolanol)

3D Structure for NP0064781 (Presilphiperfolanol)