NP-MRD: Showing NP-Card for Lactarorufin B (NP0064546)

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Record Information

Version

2.0

Created at

2022-04-28 08:45:26 UTC

Updated at

2022-04-28 08:45:26 UTC

NP-MRD ID

NP0064546

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Lactarorufin B

Description

DTXSID80904214 belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. Lactarorufin B is found in Lactarius aurantiacus, Lactarius mitissimus , Lactarius rufus and Russula delica. Based on a literature review very few articles have been published on DTXSID80904214.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
   -0.8642   -2.8372    0.5802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0708   -1.3186    0.5069 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1149   -1.0245    1.3690 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5242   -1.0154   -0.8933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3022    0.2475   -0.8185 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9178    1.3473   -0.1898 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8083    2.4211   -0.7015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9736    1.7410   -1.1236 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6060    0.4446   -1.4313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3074   -0.3443   -2.1075 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8824    1.6331    0.8052 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3945    1.5615    2.1108 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3279    0.7783    0.7447 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1619    1.0150   -0.5104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1409   -0.1339   -0.4175 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8265   -0.4198   -1.7227 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2049    0.1841    0.6088 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9701    1.2983    0.2420 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3233   -1.2722    0.1010 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1817   -0.6671    0.9200 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6243   -3.2208   -0.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7718   -3.3534    0.9346 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0278   -3.0724    1.2026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1766   -1.7182    2.0808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1996   -1.8468   -1.2018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7115   -0.9853   -1.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1166    3.1298    0.0951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3322    2.9448   -1.5578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5535    2.6841    0.6706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0037    2.2802    2.6900 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9992    1.1523    1.5784 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5762    1.0290   -1.4218 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057    1.9803   -0.4399 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9278   -0.6157   -1.5668 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4197   -1.3506   -2.1440 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7785    0.4446   -2.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9264   -0.6823    0.5963 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8244    0.2426    1.6342 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6593    2.1088    0.7542 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9711   -1.9265    0.7080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9237   -1.8863   -0.7400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3794   -0.9772    1.9879 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
 15 14  1  0
 14 13  1  0
 13 20  1  0
 20 19  1  0
 20  2  1  0
  2  1  1  0
  2  3  1  1
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  6 11  1  0
 11 12  1  0
 19 15  1  0
  9  5  1  0
 11 13  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 17 37  1  0
 17 38  1  0
 18 39  1  0
 14 32  1  0
 14 33  1  0
 13 31  1  1
 20 42  1  1
 19 40  1  0
 19 41  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  7 27  1  0
  7 28  1  0
 11 29  1  6
 12 30  1  0
M  END


  Mrv1652304282210452D          

 20 22  0  0  1  0            999 V2000
    4.2717    1.3063    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4553    0.5020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9409   -0.1430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1159   -0.1430    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6016    0.5020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7851    1.3063    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5284    1.6643    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5284    2.4893    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0769    1.7295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4556    1.1867    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7799    0.4280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8450    1.7414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0202    2.5476    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6648    0.9517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1345   -0.9678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4596   -0.6428    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2770    0.4280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7001   -0.2802    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6013    1.1867    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9800    1.7295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  6  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  1  0  0  0
 10 12  1  6  0  0  0
 12 13  1  0  0  0  0
 10 14  1  1  0  0  0
  4 15  1  1  0  0  0
  4 16  1  6  0  0  0
  2 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
  1 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0064546

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]1(CO)C[C@@H]2[C@H](C1)[C@@](C)(O)CC1=C(COC1=O)[C@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O5/c1-14(7-16)3-9-11(5-14)15(2,19)4-8-10(12(9)17)6-20-13(8)18/h9,11-12,16-17,19H,3-7H2,1-2H3/t9-,11+,12+,14-,15+/m1/s1

> <INCHI_KEY>
DBKIEMOKQWYZOA-ONAWRNRTSA-N

> <FORMULA>
C15H22O5

> <MOLECULAR_WEIGHT>
282.336

> <EXACT_MASS>
282.146723808

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
29.141577351860633

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4S,4aR,6R,7aS,8S)-4,8-dihydroxy-6-(hydroxymethyl)-6,8-dimethyl-1H,3H,4H,4aH,5H,6H,7H,7aH,8H,9H-azuleno[5,6-c]furan-1-one

> <ALOGPS_LOGP>
-0.45

> <JCHEM_LOGP>
-0.2743620090000001

> <ALOGPS_LOGS>
-1.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.428266900541352

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.340456938898733

> <JCHEM_PKA_STRONGEST_BASIC>
-1.4156488845202642

> <JCHEM_POLAR_SURFACE_AREA>
86.99

> <JCHEM_REFRACTIVITY>
72.25089999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.29e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4S,4aR,6R,7aS,8S)-4,8-dihydroxy-6-(hydroxymethyl)-6,8-dimethyl-3H,4H,4aH,5H,7H,7aH,9H-azuleno[5,6-c]furan-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.974   2.438   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.317   0.937   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.356  -0.267   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.816  -0.267   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.856   0.937   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.199   2.438   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.586   3.107   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.586   4.647   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       3.877   3.228   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.717   2.215   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.322   0.799   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.577   3.251   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.904   4.756   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.241   1.777   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.851  -1.807   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.591  -1.200   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.850   0.799   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.640  -0.523   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      10.456   2.215   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.296   3.228   0.000  0.00  0.00           C+0
CONECT    1    2    7   20                                                  
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   15   16                                             
CONECT    5    4    6   11                                                  
CONECT    6    5    7    9                                                  
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   12   14                                             
CONECT   11   10    5                                                       
CONECT   12   10   13                                                       
CONECT   13   12                                                            
CONECT   14   10                                                            
CONECT   15    4                                                            
CONECT   16    4                                                            
CONECT   17    2   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19    1                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₂O₅

Average Mass

282.3360 Da

Monoisotopic Mass

282.14672 Da

IUPAC Name

(4S,4aR,6R,7aS,8S)-4,8-dihydroxy-6-(hydroxymethyl)-6,8-dimethyl-1H,3H,4H,4aH,5H,6H,7H,7aH,8H,9H-azuleno[5,6-c]furan-1-one

Traditional Name

(4S,4aR,6R,7aS,8S)-4,8-dihydroxy-6-(hydroxymethyl)-6,8-dimethyl-3H,4H,4aH,5H,7H,7aH,9H-azuleno[5,6-c]furan-1-one

CAS Registry Number

Not Available

SMILES

C[C@@]1(CO)C[C@@H]2[C@H](C1)[C@@](C)(O)CC1=C(COC1=O)[C@H]2O

InChI Identifier

InChI=1S/C15H22O5/c1-14(7-16)3-9-11(5-14)15(2,19)4-8-10(12(9)17)6-20-13(8)18/h9,11-12,16-17,19H,3-7H2,1-2H3/t9-,11+,12+,14-,15+/m1/s1

InChI Key

DBKIEMOKQWYZOA-ONAWRNRTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lactarius aurantiacus	LOTUS Database	35616633
Lactarius mitissimus	Fungi	KNApSAcK
Lactarius rufus	Fungi	KNApSAcK
Russula delica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Sesquiterpenoid
Lactarane sesquiterpenoid
2-furanone
Dihydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Carboxylic acid ester
Lactone
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Primary alcohol
Organooxygen compound
Organic oxide
Alcohol
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.45	ALOGPS
logP	-0.27	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	12.34	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	72.25 m³·mol⁻¹	ChemAxon
Polarizability	29.14 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

95600736

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14488475

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Lactarorufin B (NP0064546)

MOL for NP0064546 (Lactarorufin B)

3D MOL for NP0064546 (Lactarorufin B)

3D SDF for NP0064546 (Lactarorufin B)

3D-SDF for NP0064546 (Lactarorufin B)

PDB for NP0064546 (Lactarorufin B)

3D PDB for NP0064546 (Lactarorufin B)

SMILES for NP0064546 (Lactarorufin B)

INCHI for NP0064546 (Lactarorufin B)

Structure for NP0064546 (Lactarorufin B)

3D Structure for NP0064546 (Lactarorufin B)