NP-MRD: Showing NP-Card for 15-Acetoxyrudmollin (NP0064164)

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Record Information

Version

2.0

Created at

2022-04-28 08:26:22 UTC

Updated at

2022-04-28 08:26:22 UTC

NP-MRD ID

NP0064164

Secondary Accession Numbers

None

Natural Product Identification

Common Name

15-Acetoxyrudmollin

Description

15-O-Acetylrudmollin belongs to the class of organic compounds known as ambrosanolides and secoambrosanolides. These are sesquiterpene lactones from the Ambrosia family, with a backbone derivative of azuleno[6,5-b]furan-2-one (ambrosanolides) or azuleno[4,5-b]furan-2-one (secoambrosanolides). 15-Acetoxyrudmollin is found in Rudbeckia mollis. Based on a literature review very few articles have been published on 15-O-Acetylrudmollin.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 48  0  0  0  0  0  0  0  0999 V2000
   -2.0965    3.3483   -0.6637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3664    2.2172   -0.0490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2927    2.0743    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8290    2.9706    1.7677 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5550    0.7193    1.2882 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6388   -0.0750    0.5170 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9003   -0.9241    1.4921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0873   -2.0249    0.8622 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2011   -2.6257    1.8848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4780   -1.5460   -0.3834 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2950   -2.5147   -1.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9663   -1.6402   -2.2279 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7357   -0.1958   -1.8041 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8427    0.5923   -1.9947 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3851   -0.3141   -0.2936 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6762   -0.5394    0.3875 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6981    0.3526    0.2534 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9256    1.6341    0.6163 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2204    2.3550    0.2795 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0292    2.2369    1.2521 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3484    0.9056    0.0888 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8252    0.8490   -0.3092 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4001    3.4260   -1.4900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5907    4.2475   -0.3325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2838   -0.7216   -0.1227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6913   -1.4391    2.1165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3591   -0.2941    2.1916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8382   -2.8180    0.5610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6753   -3.5476    2.3387 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7826   -2.9644    1.5288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0326   -1.9664    2.7870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3448   -1.2236   -1.0448 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0584   -3.1043   -0.6671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4549   -3.1799   -1.7097 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4824   -1.7762   -3.2041 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0430   -1.8657   -2.3351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1530    0.2303   -2.2832 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3207    0.2778   -2.7908 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5374   -0.6913    1.5058 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1060   -1.5547    0.0944 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3347    3.1516    1.0213 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0395    1.6243    0.4358 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1859    2.7187   -0.7563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3348    1.1227    1.1674 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0330    1.7963   -0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9206    0.6965   -1.3987 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  2 22  1  0
 22 21  1  0
 21 15  1  0
 15 16  1  1
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  2  0
 15 13  1  0
 13 14  1  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
 22  6  1  0
 10 15  1  0
  9 29  1  0
  9 30  1  0
  9 31  1  0
  8 28  1  6
  7 26  1  0
  7 27  1  0
  6 25  1  6
  1 23  1  0
  1 24  1  0
 22 46  1  6
 21 44  1  0
 21 45  1  0
 16 39  1  0
 16 40  1  0
 19 41  1  0
 19 42  1  0
 19 43  1  0
 13 37  1  6
 14 38  1  0
 12 35  1  0
 12 36  1  0
 11 33  1  0
 11 34  1  0
 10 32  1  6
M  END


  Mrv1652304282210262D          

 22 24  0  0  1  0            999 V2000
    3.4890    2.3296    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3054    1.5253    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5621    1.1673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8188    1.5253    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6352    2.3296    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1496    2.9746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9746    2.9746    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3326    3.7179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8136    2.4036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4893    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3150    1.4614    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106    1.1022    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0366    0.2805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0136    1.1022    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6349    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3107    2.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0876    0.2805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2684    0.7011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5361    0.3211    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4991   -0.5031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7669   -0.8831    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1944   -0.9472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  5  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  4 12  1  6  0  0  0
 12 13  2  0  0  0  0
  2 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  1 16  1  6  0  0  0
 14 17  1  6  0  0  0
  2 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0064164

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1C[C@H]2OC(=O)C(=C)[C@H]2C[C@]2(COC(C)=O)[C@@H](O)CC[C@@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C17H24O5/c1-9-6-14-12(10(2)16(20)22-14)7-17(8-21-11(3)18)13(9)4-5-15(17)19/h9,12-15,19H,2,4-8H2,1,3H3/t9-,12+,13-,14+,15-,17+/m0/s1

> <INCHI_KEY>
YPJDNPTZPPPTEV-AZQFOKQKSA-N

> <FORMULA>
C17H24O5

> <MOLECULAR_WEIGHT>
308.374

> <EXACT_MASS>
308.162373873

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
32.78497341683524

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(3aR,4aS,5S,7aS,8S,9aR)-5-hydroxy-8-methyl-3-methylidene-2-oxo-dodecahydroazuleno[6,5-b]furan-4a-yl]methyl acetate

> <ALOGPS_LOGP>
1.66

> <JCHEM_LOGP>
1.635164319666666

> <ALOGPS_LOGS>
-2.72

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.621630682248139

> <JCHEM_PKA_STRONGEST_BASIC>
-2.964298739584664

> <JCHEM_POLAR_SURFACE_AREA>
72.83000000000001

> <JCHEM_REFRACTIVITY>
78.8616

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.89e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3aR,4aS,5S,7aS,8S,9aR)-5-hydroxy-8-methyl-3-methylidene-2-oxo-octahydro-3aH-azuleno[6,5-b]furan-4a-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.513   4.349   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.170   2.847   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.783   2.179   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.395   2.847   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.052   4.349   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.013   5.553   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.553   5.553   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.221   6.940   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.519   4.487   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.913   3.071   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.588   2.728   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.073   2.057   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.935   0.524   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.492   2.057   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.652   3.071   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.047   4.487   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       7.630   0.524   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.101   1.309   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.734   0.599   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.665  -0.939   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       3.298  -1.648   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.963  -1.768   0.000  0.00  0.00           C+0
CONECT    1    2    7   16                                                  
CONECT    2    1    3   14   18                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    7                                                       
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    5   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    4   13                                                  
CONECT   13   12                                                            
CONECT   14    2   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15    1                                                       
CONECT   17   14                                                            
CONECT   18    2   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₂₄O₅

Average Mass

308.3740 Da

Monoisotopic Mass

308.16237 Da

IUPAC Name

[(3aR,4aS,5S,7aS,8S,9aR)-5-hydroxy-8-methyl-3-methylidene-2-oxo-dodecahydroazuleno[6,5-b]furan-4a-yl]methyl acetate

Traditional Name

[(3aR,4aS,5S,7aS,8S,9aR)-5-hydroxy-8-methyl-3-methylidene-2-oxo-octahydro-3aH-azuleno[6,5-b]furan-4a-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

C[C@H]1C[C@H]2OC(=O)C(=C)[C@H]2C[C@]2(COC(C)=O)[C@@H](O)CC[C@@H]12

InChI Identifier

InChI=1S/C17H24O5/c1-9-6-14-12(10(2)16(20)22-14)7-17(8-21-11(3)18)13(9)4-5-15(17)19/h9,12-15,19H,2,4-8H2,1,3H3/t9-,12+,13-,14+,15-,17+/m0/s1

InChI Key

YPJDNPTZPPPTEV-AZQFOKQKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rudbeckia mollis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ambrosanolides and secoambrosanolides. These are sesquiterpene lactones from the Ambrosia family, with a backbone derivative of azuleno[6,5-b]furan-2-one (ambrosanolides) or azuleno[4,5-b]furan-2-one (secoambrosanolides).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Ambrosanolides and secoambrosanolides

Alternative Parents

Substituents

Ambrosanolide
Pseudoguaiane sesquiterpenoid
Sesquiterpenoid
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Alcohol
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.66	ALOGPS
logP	1.64	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	14.62	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	72.83 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	78.86 m³·mol⁻¹	ChemAxon
Polarizability	32.78 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10266463

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21634229

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 15-Acetoxyrudmollin (NP0064164)

MOL for NP0064164 (15-Acetoxyrudmollin)

3D MOL for NP0064164 (15-Acetoxyrudmollin)

3D SDF for NP0064164 (15-Acetoxyrudmollin)

3D-SDF for NP0064164 (15-Acetoxyrudmollin)

PDB for NP0064164 (15-Acetoxyrudmollin)

3D PDB for NP0064164 (15-Acetoxyrudmollin)

SMILES for NP0064164 (15-Acetoxyrudmollin)

INCHI for NP0064164 (15-Acetoxyrudmollin)

Structure for NP0064164 (15-Acetoxyrudmollin)

3D Structure for NP0064164 (15-Acetoxyrudmollin)