NP-MRD: Showing NP-Card for Helisplendidilactone (NP0064056)

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Record Information

Version

2.0

Created at

2022-04-28 08:21:02 UTC

Updated at

2022-04-28 08:21:02 UTC

NP-MRD ID

NP0064056

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Helisplendidilactone

Description

(1'R,3R,3aR,4'S,5'S,7S,8'S,8aR,10'R,12'R)-1',5',7,10'-tetramethyl-6-(3-oxobutyl)-2,3a,4,7,8,8a-hexahydro-7'-oxaspiro[cyclohepta[b]furan-3,14'-tetracyclo[10.2.1.0²,¹¹.0⁴,⁸]Pentadecan]-2'(11')-ene-2,6'-dione belongs to the class of organic compounds known as xanthanolides. These are sesquiterpenoids with a structure based on the xanthanolide skeleton consistsing of a cycloheptane ring usually attached to a four-carbon chain (at carbon 1 ) and a methyl group (at carbon 10), and fused to a five-member lactone ring (sharing carbons 7 and 8). The lactone ring can be conjugated with a methyl or methylene group at position 11. Helisplendidilactone is found in Helichrysum splendidum. Based on a literature review very few articles have been published on (1'R,3R,3aR,4'S,5'S,7S,8'S,8aR,10'R,12'R)-1',5',7,10'-tetramethyl-6-(3-oxobutyl)-2,3a,4,7,8,8a-hexahydro-7'-oxaspiro[cyclohepta[b]furan-3,14'-tetracyclo[10.2.1.0²,¹¹.0⁴,⁸]Pentadecan]-2'(11')-ene-2,6'-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282210212D          

 35 40  0  0  1  0            999 V2000
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   -0.7297    0.3402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2 35  1  1  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304282210212D          

 35 40  0  0  1  0            999 V2000
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  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 11  9  1  1  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 13 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 17 23  1  6  0  0  0
 20 24  1  1  0  0  0
 15 25  1  6  0  0  0
 14 26  1  0  0  0  0
 26 27  1  0  0  0  0
 11 27  1  0  0  0  0
 26 28  1  1  0  0  0
 12 28  1  0  0  0  0
 12 29  1  1  0  0  0
  3 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32 34  1  0  0  0  0
  2 35  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0064056

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@@H]2CC3=C([C@@H]4C[C@@]3(C)[C@@]3(C4)[C@H]4CC=C(CCC(C)=O)[C@@H](C)C[C@H]4OC3=O)[C@H](C)C[C@@H]2OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C30H40O5/c1-15-10-25-22(9-8-19(15)7-6-17(3)31)30(28(33)35-25)14-20-13-29(30,5)23-12-21-18(4)27(32)34-24(21)11-16(2)26(20)23/h8,15-16,18,20-22,24-25H,6-7,9-14H2,1-5H3/t15-,16+,18-,20+,21-,22-,24-,25+,29+,30-/m0/s1

> <INCHI_KEY>
PBRFBLDLWSWNGY-LZZAOPGVSA-N

> <FORMULA>
C30H40O5

> <MOLECULAR_WEIGHT>
480.645

> <EXACT_MASS>
480.287574388

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
53.41226642359823

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'R,3R,3aR,4'S,5'S,7S,8'S,8aR,10'R,12'R)-1',5',7,10'-tetramethyl-6-(3-oxobutyl)-2,3a,4,7,8,8a-hexahydro-7'-oxaspiro[cyclohepta[b]furan-3,14'-tetracyclo[10.2.1.0^{2,11}.0^{4,8}]pentadecan]-2'(11')-ene-2,6'-dione

> <ALOGPS_LOGP>
5.19

> <JCHEM_LOGP>
4.472622873333332

> <ALOGPS_LOGS>
-5.06

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.595438331492733

> <JCHEM_PKA_STRONGEST_BASIC>
-6.680134390657529

> <JCHEM_POLAR_SURFACE_AREA>
69.67000000000002

> <JCHEM_REFRACTIVITY>
133.45319999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.21e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,3R,3aR,4'S,5'S,7S,8'S,8aR,10'R,12'R)-1',5',7,10'-tetramethyl-6-(3-oxobutyl)-4,7,8,8a-tetrahydro-3aH-7'-oxaspiro[cyclohepta[b]furan-3,14'-tetracyclo[10.2.1.0^{2,11}.0^{4,8}]pentadecan]-2'(11')-ene-2,6'-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -2.445  -3.185   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.847  -4.604   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.364  -5.021   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.886  -4.122   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.963  -2.584   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.192  -1.565   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.709  -1.832   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -2.432  -0.473   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.362   0.635   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -1.630   2.152   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.022  -0.040   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.328  -0.856   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.688  -0.133   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.741   1.406   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.978   2.324   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.467   1.929   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.086   0.519   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.370  -0.844   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.858  -1.134   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.446  -1.946   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.826  -1.264   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       9.190  -1.980   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       7.604   0.260   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.186  -3.464   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.688   3.836   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.435   2.222   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.076   1.499   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.997   0.697   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.753  -2.336   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.097  -6.538   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.351  -7.064   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       1.618  -8.581   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       3.065  -9.107   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       0.439  -9.571   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -2.866  -5.759   0.000  0.00  0.00           C+0
CONECT    1    2    7                                                       
CONECT    2    1    3   35                                                  
CONECT    3    2    4   30                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    1    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9    6   12   27                                             
CONECT   12   11   13   28   29                                             
CONECT   13   12   14   19                                                  
CONECT   14   13   15   26                                                  
CONECT   15   14   16   25                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   23                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   13                                                       
CONECT   20   18   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   17                                                       
CONECT   24   20                                                            
CONECT   25   15                                                            
CONECT   26   14   27   28                                                  
CONECT   27   26   11                                                       
CONECT   28   26   12                                                       
CONECT   29   12                                                            
CONECT   30    3   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35    2                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₀O₅

Average Mass

480.6450 Da

Monoisotopic Mass

480.28757 Da

IUPAC Name

Traditional Name

(1'R,3R,3aR,4'S,5'S,7S,8'S,8aR,10'R,12'R)-1',5',7,10'-tetramethyl-6-(3-oxobutyl)-4,7,8,8a-tetrahydro-3aH-7'-oxaspiro[cyclohepta[b]furan-3,14'-tetracyclo[10.2.1.0^{2,11}.0^{4,8}]pentadecan]-2'(11')-ene-2,6'-dione

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@@H]2CC3=C([C@@H]4C[C@@]3(C)[C@@]3(C4)[C@H]4CC=C(CCC(C)=O)[C@@H](C)C[C@H]4OC3=O)[C@H](C)C[C@@H]2OC1=O

InChI Identifier

InChI=1S/C30H40O5/c1-15-10-25-22(9-8-19(15)7-6-17(3)31)30(28(33)35-25)14-20-13-29(30,5)23-12-21-18(4)27(32)34-24(21)11-16(2)26(20)23/h8,15-16,18,20-22,24-25H,6-7,9-14H2,1-5H3/t15-,16+,18-,20+,21-,22-,24-,25+,29+,30-/m0/s1

InChI Key

PBRFBLDLWSWNGY-LZZAOPGVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Helichrysum splendidum	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthanolides. These are sesquiterpenoids with a structure based on the xanthanolide skeleton consistsing of a cycloheptane ring usually attached to a four-carbon chain (at carbon 1 ) and a methyl group (at carbon 10), and fused to a five-member lactone ring (sharing carbons 7 and 8). The lactone ring can be conjugated with a methyl or methylene group at position 11.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Xanthanolides

Alternative Parents

Substituents

Xanthanolide-skeleton
Sesquiterpenoid
Gamma butyrolactone
Dicarboxylic acid or derivatives
Tetrahydrofuran
Lactone
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.19	ALOGPS
logP	4.47	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	19.6	ChemAxon
pKa (Strongest Basic)	-6.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	69.67 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	133.45 m³·mol⁻¹	ChemAxon
Polarizability	53.41 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163105479

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Helisplendidilactone (NP0064056)

MOL for NP0064056 (Helisplendidilactone)

3D MOL for NP0064056 (Helisplendidilactone)

3D SDF for NP0064056 (Helisplendidilactone)

3D-SDF for NP0064056 (Helisplendidilactone)

PDB for NP0064056 (Helisplendidilactone)

3D PDB for NP0064056 (Helisplendidilactone)

SMILES for NP0064056 (Helisplendidilactone)

INCHI for NP0064056 (Helisplendidilactone)

Structure for NP0064056 (Helisplendidilactone)

3D Structure for NP0064056 (Helisplendidilactone)