NP-MRD: Showing NP-Card for Lemmonin D (NP0064008)

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Record Information

Version

2.0

Created at

2022-04-28 08:18:14 UTC

Updated at

2022-04-28 08:18:14 UTC

NP-MRD ID

NP0064008

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Lemmonin D

Description

Lemmonin D belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. Lemmonin D is found in Hymenoxys lemmonii and Hymenoxys richardsonii. Based on a literature review very few articles have been published on Lemmonin D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282210182D          

 32 35  0  0  1  0            999 V2000
    3.4890    2.3296    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3054    1.5253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5621    1.1673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8188    1.5253    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6352    2.3296    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1496    2.9746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9746    2.9746    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3326    3.7179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8136    2.4036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4893    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3150    1.4614    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106    1.1022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0366    0.2805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0136    1.1022    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6349    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3107    2.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6747    0.3500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4814    0.4226    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3038    0.4879    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6585    1.2328    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4809    1.2982    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9487    0.6186    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5940   -0.1263    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7716   -0.1916    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0618   -0.8058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8842   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3520   -1.4200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1744   -1.3547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9974   -2.1649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7711    0.6840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8355    2.0431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1907    1.9124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  2  3  2  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  1  0  0  0
  5  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  6  0  0  0
  2 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  1 16  1  0  0  0  0
 14 17  1  6  0  0  0
 14 18  1  1  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 19 24  1  0  0  0  0
 23 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 22 30  1  6  0  0  0
 21 31  1  1  0  0  0
 20 32  1  6  0  0  0
M  END

     RDKit          3D

 66 69  0  0  0  0  0  0  0  0999 V2000
    7.9870    1.8022    0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4989    1.8993   -0.0696 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9232    2.3510    0.9400 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7911    1.5116   -1.1928 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3907    1.5820   -1.3030 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7034    0.6811   -0.2570 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3517    0.7513   -0.3559 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6141   -0.3518    0.0304 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2862   -0.2537   -0.2279 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6006   -0.1822    0.7825 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3912    1.0582    1.6520 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8039   -1.3504    1.6679 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8212   -2.2438    1.0371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2791   -1.4901   -0.1896 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9699   -0.1082    0.1189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5903    1.0163   -0.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8760    1.3216   -0.6779 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4933    2.4625    0.1517 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2732    2.2319    1.6303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9286    2.2756   -0.1163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8339    3.1345   -0.2982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1311    0.9085   -0.1365 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9362    0.2999   -0.6393 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6856   -0.9097    0.1881 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6979   -1.7801   -0.5496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8411   -1.6756   -2.0523 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1546   -1.6319   -0.5546 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3008   -2.6688   -0.2594 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5033   -1.8167    0.1513 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0732   -3.0381   -0.2052 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3473   -0.6529   -0.2155 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.5189   -0.6814    0.5740 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3118    0.8501    0.4702 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4308    1.8083   -1.0120 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3865    2.6367    0.6194 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0217    1.3761   -2.3054 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1227    2.6592   -1.0884 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9512    1.1829    0.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7498   -0.4208    1.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1554    1.9441    1.0372 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5161    0.8748    2.2801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2165    1.2034    2.3635 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0720   -1.8970    2.0044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2856   -0.9807    2.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7375   -2.3622    1.6734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4127   -3.2453    0.7795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6298   -1.8401   -1.0344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0547    1.8934    0.3004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7621    1.7959   -1.7038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1079    3.4372   -0.1922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2377    2.0673    2.1802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8748    3.1935    2.0701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5432    1.4579    1.8584 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1969    0.0060   -1.6803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3272   -0.7049    1.1937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6563   -1.4869    0.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9179   -2.8328   -0.2759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1441   -2.4495   -2.4772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4464   -0.7090   -2.4350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8356   -1.9301   -2.4199 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2985   -1.5658   -1.6533 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577   -3.1796   -1.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3096   -1.8380    1.2343 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2337   -3.0522   -1.1874 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7357   -0.8604   -1.2585 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0525   -1.4841    0.3508 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 10  1  0
 10 11  1  0
 10  9  1  6
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
  6 31  1  0
 31 32  1  0
 31 29  1  0
 29 30  1  0
 29 27  1  0
 27 28  1  0
 14 25  1  0
 25 26  1  0
 25 24  1  0
 24 23  1  0
 23 22  1  0
 22 20  1  0
 20 21  2  0
 20 18  1  0
 23 17  1  0
 10 15  1  0
 27  8  1  0
 19 51  1  0
 19 52  1  0
 19 53  1  0
 18 50  1  6
 17 49  1  6
 16 48  1  0
 14 47  1  6
 13 45  1  0
 13 46  1  0
 12 43  1  0
 12 44  1  0
 11 40  1  0
 11 41  1  0
 11 42  1  0
  8 39  1  1
  6 38  1  1
  5 36  1  0
  5 37  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
 31 65  1  6
 32 66  1  0
 29 63  1  1
 30 64  1  0
 27 61  1  6
 28 62  1  0
 25 57  1  1
 26 58  1  0
 26 59  1  0
 26 60  1  0
 24 55  1  0
 24 56  1  0
 23 54  1  6
M  END


  Mrv1652304282210182D          

 32 35  0  0  1  0            999 V2000
    3.4890    2.3296    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3054    1.5253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5621    1.1673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8188    1.5253    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6352    2.3296    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1496    2.9746    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9746    2.9746    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3326    3.7179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8136    2.4036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4893    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3150    1.4614    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106    1.1022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0366    0.2805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0136    1.1022    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6349    1.6449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3107    2.4036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6747    0.3500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4814    0.4226    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3038    0.4879    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6585    1.2328    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4809    1.2982    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.9487    0.6186    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5940   -0.1263    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7716   -0.1916    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0618   -0.8058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8842   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3520   -1.4200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1744   -1.3547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9974   -2.1649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7711    0.6840    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8355    2.0431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1907    1.9124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  2  3  2  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  1  0  0  0
  5  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  6  0  0  0
  2 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  1 16  1  0  0  0  0
 14 17  1  6  0  0  0
 14 18  1  1  0  0  0
 19 18  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 19 24  1  0  0  0  0
 23 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 22 30  1  6  0  0  0
 21 31  1  1  0  0  0
 20 32  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0064008

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2C=C3[C@@H](CC[C@@]3(C)O[C@@H]3O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]3O)[C@H](C)C[C@H]2OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C23H34O9/c1-10-7-16-14(11(2)21(28)30-16)8-15-13(10)5-6-23(15,4)32-22-20(27)19(26)18(25)17(31-22)9-29-12(3)24/h8,10-11,13-14,16-20,22,25-27H,5-7,9H2,1-4H3/t10-,11+,13+,14-,16-,17-,18-,19+,20-,22+,23-/m1/s1

> <INCHI_KEY>
ACTMGSKCMXZHRH-RHQDMFLTSA-N

> <FORMULA>
C23H34O9

> <MOLECULAR_WEIGHT>
454.516

> <EXACT_MASS>
454.220282675

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.2883513028466

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6S)-6-{[(3S,3aR,5R,7aS,8R,9aR)-3,5,8-trimethyl-2-oxo-2H,3H,3aH,5H,6H,7H,7aH,8H,9H,9aH-azuleno[6,5-b]furan-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

> <ALOGPS_LOGP>
0.77

> <JCHEM_LOGP>
0.5783951933333321

> <ALOGPS_LOGS>
-2.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.214436411607245

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.211234055244502

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6490855622810168

> <JCHEM_POLAR_SURFACE_AREA>
131.75

> <JCHEM_REFRACTIVITY>
110.70989999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.01e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6S)-6-{[(3S,3aR,5R,7aS,8R,9aR)-3,5,8-trimethyl-2-oxo-3H,3aH,6H,7H,7aH,8H,9H,9aH-azuleno[6,5-b]furan-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.513   4.349   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.170   2.847   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.783   2.179   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.395   2.847   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.052   4.349   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.013   5.553   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.553   5.553   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.221   6.940   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.519   4.487   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.913   3.071   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.588   2.728   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.073   2.057   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.935   0.524   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.492   2.057   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.652   3.071   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.047   4.487   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.859   0.653   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       8.365   0.789   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       9.901   0.911   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.562   2.301   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.098   2.423   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.971   1.155   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.309  -0.236   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      10.774  -0.358   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      13.182  -1.504   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      14.717  -1.382   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      15.590  -2.651   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      17.126  -2.529   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      14.929  -4.041   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      14.506   1.277   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      12.760   3.814   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       9.689   3.570   0.000  0.00  0.00           O+0
CONECT    1    2    7   16                                                  
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    7                                                       
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    5   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    4   13                                                  
CONECT   13   12                                                            
CONECT   14    2   15   17   18                                             
CONECT   15   14   16                                                       
CONECT   16   15    1                                                       
CONECT   17   14                                                            
CONECT   18   14   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21   32                                                  
CONECT   21   20   22   31                                                  
CONECT   22   21   23   30                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23   19                                                       
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   22                                                            
CONECT   31   21                                                            
CONECT   32   20                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₃₄O₉

Average Mass

454.5160 Da

Monoisotopic Mass

454.22028 Da

IUPAC Name

[(2R,3S,4S,5R,6S)-6-{[(3S,3aR,5R,7aS,8R,9aR)-3,5,8-trimethyl-2-oxo-2H,3H,3aH,5H,6H,7H,7aH,8H,9H,9aH-azuleno[6,5-b]furan-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

Traditional Name

[(2R,3S,4S,5R,6S)-6-{[(3S,3aR,5R,7aS,8R,9aR)-3,5,8-trimethyl-2-oxo-3H,3aH,6H,7H,7aH,8H,9H,9aH-azuleno[6,5-b]furan-5-yl]oxy}-3,4,5-trihydroxyoxan-2-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2C=C3[C@@H](CC[C@@]3(C)O[C@@H]3O[C@H](COC(C)=O)[C@@H](O)[C@H](O)[C@H]3O)[C@H](C)C[C@H]2OC1=O

InChI Identifier

InChI=1S/C23H34O9/c1-10-7-16-14(11(2)21(28)30-16)8-15-13(10)5-6-23(15,4)32-22-20(27)19(26)18(25)17(31-22)9-29-12(3)24/h8,10-11,13-14,16-20,22,25-27H,5-7,9H2,1-4H3/t10-,11+,13+,14-,16-,17-,18-,19+,20-,22+,23-/m1/s1

InChI Key

ACTMGSKCMXZHRH-RHQDMFLTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hymenoxys lemmonii	Plant	KNApSAcK
Hymenoxys richardsonii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

O-glycosyl compound
Dicarboxylic acid or derivatives
Gamma butyrolactone
Monosaccharide
Oxane
Tetrahydrofuran
Carboxylic acid ester
Lactone
Secondary alcohol
Oxacycle
Acetal
Carboxylic acid derivative
Organoheterocyclic compound
Polyol
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.77	ALOGPS
logP	0.58	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	131.75 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	110.71 m³·mol⁻¹	ChemAxon
Polarizability	46.29 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00020926

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102437299

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Lemmonin D (NP0064008)

MOL for NP0064008 (Lemmonin D)

3D MOL for NP0064008 (Lemmonin D)

3D SDF for NP0064008 (Lemmonin D)

3D-SDF for NP0064008 (Lemmonin D)

PDB for NP0064008 (Lemmonin D)

3D PDB for NP0064008 (Lemmonin D)

SMILES for NP0064008 (Lemmonin D)

INCHI for NP0064008 (Lemmonin D)

Structure for NP0064008 (Lemmonin D)

3D Structure for NP0064008 (Lemmonin D)