NP-MRD: Showing NP-Card for Pechueloic acid (NP0063563)

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Record Information

Version

2.0

Created at

2022-04-28 07:56:57 UTC

Updated at

2022-04-28 07:56:57 UTC

NP-MRD ID

NP0063563

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pechueloic acid

Description

Rupestonic acid, also known as rupestonate, belongs to the class of organic compounds known as guaianes. These are sesquiterpenoids with a structure based on the guaiane skeleton. Guaiane is a bicyclic compound consisting of a decahydroazulene moiety, substituted with two methyl groups and a 1-methylethyl group at the 1-, 4-, and 7-position, respectively. Pechueloic acid is found in Artemisia rupestris, Decachaeta scabrella and Pechuel-loeschea leubnitziae. Pechueloic acid was first documented in 2017 (PMID: 29211481). Based on a literature review a small amount of articles have been published on Rupestonic acid (PMID: 32117796) (PMID: 31439378) (PMID: 29971616) (PMID: 28196702).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
    3.4093    0.7431   -0.5982 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9142   -0.2407    0.1300 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8152   -1.2700    0.6180 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3594   -2.2214    1.3178 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1602   -1.1914    0.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4684   -0.3215    0.4610 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9035   -1.6548    0.0523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4473   -1.5305   -0.6077 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5516   -1.3805    0.4202 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8511   -1.6844   -0.2701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4579   -0.0268    1.0089 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7500    0.6873    1.2059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8136    1.6150    0.0856 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8481    2.1358   -0.3856 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4553    1.8247   -0.3844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0039    2.9055   -1.3012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6807    0.8803    0.1496 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7702    0.8438   -0.1542 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4572    0.8229   -0.8517 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7856    1.5482   -0.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7197   -0.5370    0.8675 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3738   -0.2312    1.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8366   -2.3644    0.9078 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5827   -2.1383   -0.6911 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6545   -2.4344   -1.2158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4373   -0.6626   -1.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4113   -2.1439    1.2144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9827   -0.9643   -1.0973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7214   -2.7019   -0.7450 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7123   -1.7674    0.3885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8999   -0.0896    1.9872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6747    1.2903    2.1457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6285    0.0420    1.3266 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0103    3.2849   -1.0159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9563    2.4948   -2.3344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7041    3.7670   -1.2674 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2074    1.7674    0.2768 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8691    0.9041   -1.2496 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6 18  1  0
 18 17  1  0
 17 15  2  0
 15 16  1  0
 15 13  1  0
 13 14  2  0
 13 12  1  0
 12 11  1  0
  6  2  1  0
  2  1  2  3
  2  3  1  0
  3  5  1  0
  3  4  2  0
 11  9  1  0
 11 17  1  0
 10 28  1  0
 10 29  1  0
 10 30  1  0
  9 27  1  1
  8 25  1  0
  8 26  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  1
 18 37  1  0
 18 38  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 12 32  1  0
 12 33  1  0
 11 31  1  1
  1 19  1  0
  1 20  1  0
  5 21  1  0
M  END


  Mrv1652304282209562D          

 18 19  0  0  1  0            999 V2000
    0.5363   -1.1136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2483   -1.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7333   -0.7011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5583   -0.7011    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2483   -0.0336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5363   -0.2886    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1813    0.2258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9856    0.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3436   -0.7011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9856   -1.4444    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1813   -1.6280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5000   -2.0894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3158   -1.9664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1986   -2.8574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7130   -3.5024    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3828   -2.9803    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9977    1.0301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5033   -2.1531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  1 11  1  0  0  0  0
 10 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  7 17  1  1  0  0  0
  2 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0063563

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CC[C@H](CC2=C(C)C(=O)C[C@@H]12)C(=C)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O3/c1-8-4-5-11(9(2)15(17)18)6-13-10(3)14(16)7-12(8)13/h8,11-12H,2,4-7H2,1,3H3,(H,17,18)/t8-,11+,12-/m0/s1

> <INCHI_KEY>
ZFHSKBJBODQVBX-AXTRIDKLSA-N

> <FORMULA>
C15H20O3

> <MOLECULAR_WEIGHT>
248.322

> <EXACT_MASS>
248.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
27.400517725201503

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(5R,8S,8aS)-3,8-dimethyl-2-oxo-1,2,4,5,6,7,8,8a-octahydroazulen-5-yl]prop-2-enoic acid

> <ALOGPS_LOGP>
2.59

> <JCHEM_LOGP>
2.987032781

> <ALOGPS_LOGS>
-3.07

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.760712984972141

> <JCHEM_PKA_STRONGEST_BASIC>
-4.789922257813263

> <JCHEM_POLAR_SURFACE_AREA>
54.370000000000005

> <JCHEM_REFRACTIVITY>
69.6697

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.13e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(5R,8S,8aS)-3,8-dimethyl-2-oxo-4,5,6,7,8,8a-hexahydro-1H-azulen-5-yl]prop-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       1.001  -2.079   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.464  -2.555   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.369  -1.309   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -2.909  -1.309   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.464  -0.063   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.001  -0.539   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.205   0.421   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.706   0.079   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.375  -1.309   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.706  -2.696   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.205  -3.039   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.667  -3.900   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.189  -3.671   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.104  -5.334   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       5.064  -6.538   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       2.581  -5.563   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.862   1.923   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.939  -4.019   0.000  0.00  0.00           C+0
CONECT    1    2    6   11                                                  
CONECT    2    1    3   18                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8   17                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10    1                                                       
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17    7                                                            
CONECT   18    2                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Value	Source
Rupestonate	Generator

Chemical Formula

C₁₅H₂₀O₃

Average Mass

248.3220 Da

Monoisotopic Mass

248.14124 Da

IUPAC Name

2-[(5R,8S,8aS)-3,8-dimethyl-2-oxo-1,2,4,5,6,7,8,8a-octahydroazulen-5-yl]prop-2-enoic acid

Traditional Name

2-[(5R,8S,8aS)-3,8-dimethyl-2-oxo-4,5,6,7,8,8a-hexahydro-1H-azulen-5-yl]prop-2-enoic acid

CAS Registry Number

Not Available

SMILES

C[C@H]1CC[C@H](CC2=C(C)C(=O)C[C@@H]12)C(=C)C(O)=O

InChI Identifier

InChI=1S/C15H20O3/c1-8-4-5-11(9(2)15(17)18)6-13-10(3)14(16)7-12(8)13/h8,11-12H,2,4-7H2,1,3H3,(H,17,18)/t8-,11+,12-/m0/s1

InChI Key

ZFHSKBJBODQVBX-AXTRIDKLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Artemisia rupestris	LOTUS Database	35616633
Decachaeta scabrella	Plant	KNApSAcK
Pechuel-loeschea leubnitziae	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as guaianes. These are sesquiterpenoids with a structure based on the guaiane skeleton. Guaiane is a bicyclic compound consisting of a decahydroazulene moiety, substituted with two methyl groups and a 1-methylethyl group at the 1-, 4-, and 7-position, respectively.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Guaianes

Alternative Parents

Substituents

Guaiane sesquiterpenoid
Cyclic ketone
Ketone
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.59	ALOGPS
logP	2.99	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	4.76	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	54.37 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	69.67 m³·mol⁻¹	ChemAxon
Polarizability	27.4 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00050994

Chemspider ID

22913795

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

24094149

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Xu L, Jiang W, Jia H, Zheng L, Xing J, Liu A, Du G: Discovery of Multitarget-Directed Ligands Against Influenza A Virus From Compound Yizhihao Through a Predictive System for Compound-Protein Interactions. Front Cell Infect Microbiol. 2020 Feb 11;10:16. doi: 10.3389/fcimb.2020.00016. eCollection 2020. [PubMed:32117796 ]
Li G, Obul M, Zhao JY, Liu GY, Lu W, Aisa HA: Novel amides modified rupestonic acid derivatives as anti-influenza virus reagents. Bioorg Med Chem Lett. 2019 Oct 1;29(19):126605. doi: 10.1016/j.bmcl.2019.08.009. Epub 2019 Aug 6. [PubMed:31439378 ]
Obul M, Wang X, Zhao J, Li G, Aisa HA, Huang G: Structural modification on rupestonic acid leads to highly potent inhibitors against influenza virus. Mol Divers. 2019 Feb;23(1):1-9. doi: 10.1007/s11030-018-9840-5. Epub 2018 Jul 3. [PubMed:29971616 ]
Han P, Zhou Z, Si CM, Sha XY, Gu ZY, Wei BG, Lin GQ: Asymmetric Synthesis of Rupestonic Acid and Pechueloic Acid. Org Lett. 2017 Dec 15;19(24):6732-6735. doi: 10.1021/acs.orglett.7b03459. Epub 2017 Dec 6. [PubMed:29211481 ]
Li G, Zhao JY, Niu C, Nie LF, Dong CZ, Aisa HA: Structure-activity relationship studies of 1-(1'-hydroxyalkyl)rupestonic acid methyl esters against influenza viruses. Bioorg Med Chem Lett. 2017 Mar 15;27(6):1484-1487. doi: 10.1016/j.bmcl.2016.06.011. Epub 2016 Jun 6. [PubMed:28196702 ]

Showing NP-Card for Pechueloic acid (NP0063563)

MOL for NP0063563 (Pechueloic acid)

3D MOL for NP0063563 (Pechueloic acid)

3D SDF for NP0063563 (Pechueloic acid)

3D-SDF for NP0063563 (Pechueloic acid)

PDB for NP0063563 (Pechueloic acid)

3D PDB for NP0063563 (Pechueloic acid)

SMILES for NP0063563 (Pechueloic acid)

INCHI for NP0063563 (Pechueloic acid)

Structure for NP0063563 (Pechueloic acid)

3D Structure for NP0063563 (Pechueloic acid)