NP-MRD: Showing NP-Card for 5,7-Dihydroxy-3',4'-methylenedioxyflavone (NP0063368)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-04-28 07:47:42 UTC

Updated at

2022-04-28 07:47:42 UTC

NP-MRD ID

NP0063368

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,7-Dihydroxy-3',4'-methylenedioxyflavone

Description

CHEMBL181600 belongs to the class of organic compounds known as flavones. These are flavonoids with a structure based on the backbone of 2-phenylchromen-4-one (2-phenyl-1-benzopyran-4-one). 5,7-Dihydroxy-3',4'-methylenedioxyflavone is found in Senna polyphylla. CHEMBL181600 is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 35  0  0  0  0  0  0  0  0999 V2000
    1.7940    0.7986   -3.0751 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5115    0.4461   -1.9063 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1979    0.3287   -1.4991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1244   -0.0562   -0.2227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5022   -0.1840    0.2199 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7524   -0.5813    1.5363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0215   -0.7280    2.0396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1235   -0.4840    1.2493 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9055   -0.0916   -0.0506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6085    0.0569   -0.5601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1519    0.0888   -0.6287 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1585   -0.3335    0.2926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4913   -0.5546    1.5023 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8619   -0.3161    0.6218 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201   -0.2151    0.2696 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1215   -0.4940    1.1768 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4516   -0.3969    0.8363 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4588   -0.6749    1.7401 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8086   -0.0136   -0.4355 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8442    0.2728   -1.3679 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1243    0.6644   -2.6656 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5225    0.1677   -1.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5637    0.5519   -2.2256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -0.7773    2.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2227   -1.0360    3.0605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4580    0.3649   -1.5803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5981   -1.2644   -0.1232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8959    0.4991    0.3475 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8858   -0.7978    2.1839 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8756   -1.5759    1.8798 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8449    0.0776   -0.7518 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0613    0.7718   -3.0343 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  2  0
  4 14  1  0
 14 15  1  0
 15 16  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8 13  1  0
 13 12  1  0
 12 11  1  0
 11  9  1  0
  9 10  2  0
 16 17  1  0
 10  5  1  0
 15 22  1  0
  9  8  1  0
 18 30  1  0
 19 31  1  0
 21 32  1  0
  3 23  1  0
 16 29  1  0
  6 24  1  0
  7 25  1  0
 12 27  1  0
 12 28  1  0
 10 26  1  0
M  END


  Mrv1533004181502252D          

 22 25  0  0  0  0            999 V2000
    5.4957    8.1229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    7.2979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    6.8854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    6.0604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    5.6479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    5.6479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    4.4104    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    5.6479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    6.0604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    6.8854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    3.3305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    3.9979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    4.6654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    4.4104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    4.8229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  2  0  0  0  0
  2 13  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 17 21  1  0  0  0  0
 21 22  2  0  0  0  0
 14 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0063368

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC(O)=C2C(=O)C=C(OC2=C1)C1=CC=C2OCOC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H10O6/c17-9-4-10(18)16-11(19)6-13(22-15(16)5-9)8-1-2-12-14(3-8)21-7-20-12/h1-6,17-18H,7H2

> <INCHI_KEY>
LHUUGUDSYBWEPF-UHFFFAOYSA-N

> <FORMULA>
C16H10O6

> <MOLECULAR_WEIGHT>
298.25

> <EXACT_MASS>
298.047738042

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
29.268630929956903

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(2H-1,3-benzodioxol-5-yl)-5,7-dihydroxy-4H-chromen-4-one

> <ALOGPS_LOGP>
2.75

> <JCHEM_LOGP>
2.6334879229999997

> <ALOGPS_LOGS>
-3.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.18041218197159

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.577743953361649

> <JCHEM_PKA_STRONGEST_BASIC>
-4.656823033434718

> <JCHEM_POLAR_SURFACE_AREA>
85.22000000000001

> <JCHEM_REFRACTIVITY>
76.69990000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.23e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(2H-1,3-benzodioxol-5-yl)-5,7-dihydroxychromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  O   UNK     0      10.259  15.163   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      10.259  13.623   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.592  12.853   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.592  11.313   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      12.926  10.543   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      10.259  10.543   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.259   9.003   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      11.592   8.233   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.925   8.233   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.591   9.003   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.591  10.543   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.925  11.313   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.925  12.853   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.258   8.233   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.258   6.693   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.924   5.923   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.590   6.693   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       2.126   6.217   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.220   7.463   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.126   8.709   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.590   8.233   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.924   9.003   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   13                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   12                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11    6   13                                                  
CONECT   13   12    2                                                       
CONECT   14   10   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   21                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   17   22                                                  
CONECT   22   21   14                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₀O₆

Average Mass

298.2500 Da

Monoisotopic Mass

298.04774 Da

IUPAC Name

2-(2H-1,3-benzodioxol-5-yl)-5,7-dihydroxy-4H-chromen-4-one

Traditional Name

2-(2H-1,3-benzodioxol-5-yl)-5,7-dihydroxychromen-4-one

CAS Registry Number

Not Available

SMILES

OC1=CC(O)=C2C(=O)C=C(OC2=C1)C1=CC=C2OCOC2=C1

InChI Identifier

InChI=1S/C16H10O6/c17-9-4-10(18)16-11(19)6-13(22-15(16)5-9)8-1-2-12-14(3-8)21-7-20-12/h1-6,17-18H,7H2

InChI Key

LHUUGUDSYBWEPF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Senna polyphylla	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as flavones. These are flavonoids with a structure based on the backbone of 2-phenylchromen-4-one (2-phenyl-1-benzopyran-4-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavones

Direct Parent

Flavones

Alternative Parents

Substituents

5-hydroxyflavonoid
7-hydroxyflavonoid
Flavone
Hydroxyflavonoid
Chromone
Benzopyran
1-benzopyran
Benzodioxole
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Pyranone
Benzenoid
Pyran
Vinylogous acid
Heteroaromatic compound
Organoheterocyclic compound
Oxacycle
Acetal
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.75	ALOGPS
logP	2.63	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	6.58	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	85.22 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	76.7 m³·mol⁻¹	ChemAxon
Polarizability	29.27 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11231818

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 5,7-Dihydroxy-3',4'-methylenedioxyflavone (NP0063368)

MOL for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

3D MOL for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

3D SDF for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

3D-SDF for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

PDB for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

3D PDB for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

SMILES for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

INCHI for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

Structure for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)

3D Structure for NP0063368 (5,7-Dihydroxy-3',4'-methylenedioxyflavone)