NP-MRD: Showing NP-Card for Rifamycin verde (NP0062098)

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Record Information

Version

2.0

Created at

2022-04-28 06:46:05 UTC

Updated at

2022-04-28 06:46:05 UTC

NP-MRD ID

NP0062098

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Rifamycin verde

Description

Rifamycin verde is found in Nocardia mediterranea.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282208462D          

 54 58  0  0  1  0            999 V2000
   12.3121    1.9155    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4330    1.0931    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   12.0304   -0.5022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5359   -1.1673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8874   -1.6819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1282   -2.0121    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3096   -2.1441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.3295   -2.8862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6752   -1.8401    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3038   -1.5013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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  5 60  1  0
  8 61  1  0
  8 62  1  0
  8 63  1  0
 12 64  1  0
 12 65  1  0
 12 66  1  0
 14 67  1  0
 17 68  1  0
 30 70  1  0
 34 71  1  0
 34 72  1  0
 34 73  1  0
 35 74  1  0
 36 75  1  0
 37 76  1  0
 38 77  1  6
 39 78  1  0
 39 79  1  0
 39 80  1  0
 40 81  1  6
 41 82  1  0
 42 83  1  1
 43 84  1  0
 43 85  1  0
 43 86  1  0
 44 87  1  6
 45 88  1  0
 46 89  1  6
 47 90  1  0
 47 91  1  0
 47 92  1  0
 48 93  1  1
 51 94  1  0
 51 95  1  0
 51 96  1  0
 53 97  1  6
 54 98  1  0
 54 99  1  0
 54100  1  0
 23 69  1  0
M  END


  Mrv1652304282208462D          

 54 58  0  0  1  0            999 V2000
   12.3121    1.9155    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.4330    1.0931    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.3366    0.2688    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.0304   -0.5022    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5359   -1.1673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8874   -1.6819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1282   -2.0121    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3096   -2.1441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4801   -2.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3295   -2.8862    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6752   -1.8401    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3038   -1.5013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7457   -0.7096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6575    0.1107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1828    0.6802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0099    0.2462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0480   -1.0873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6529   -1.3521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4784    0.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4229    1.1787    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1063    1.6791    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8497    1.3150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4407    1.9296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2551    1.7977    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0769    2.6932    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.6117    3.3786    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2834    3.9218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0983    4.1529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9398    4.1130    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.7382    3.8404    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.4504    3.3388    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.9815    2.6793    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.6877    3.1058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0147    3.9406    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7756    4.7302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9723    4.9180    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3399    5.3320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1128    4.5754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0942    4.9234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.4695    5.4623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2411    2.5239    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6429    3.3948    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6750    1.5271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7905   -0.1053    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9030    0.4444    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.2367   -0.0421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3250   -0.8624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5397   -0.6094    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0794   -1.1961    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.3413   -2.9685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7509   -0.9040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1365    0.0669    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.2579    1.1053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1056    2.1413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  2  0  0  0  0
 17 18  1  0  0  0  0
 16 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 15 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
  1 32  1  0  0  0  0
 32 33  1  6  0  0  0
 31 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 30 38  1  1  0  0  0
 29 39  1  6  0  0  0
 39 40  1  0  0  0  0
 25 41  1  0  0  0  0
 21 41  1  0  0  0  0
 25 42  1  6  0  0  0
 20 43  1  0  0  0  0
 19 44  1  0  0  0  0
 14 45  1  0  0  0  0
 45 46  2  0  0  0  0
 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 47 49  1  0  0  0  0
 13 49  1  0  0  0  0
  8 50  1  0  0  0  0
  4 51  1  6  0  0  0
  3 52  1  6  0  0  0
  2 53  1  1  0  0  0
  1 54  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0062098

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1\C=C/O[C@]2(C)OC3=C(C)C(O)=C4C(O)=C(NC(=O)\C(C)=C/C=C\[C@@H](C)[C@@H](O)[C@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)C1=C(N=CC(=O)S1)C4=C3C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C39H46N2O12S/c1-16-11-10-12-17(2)38(49)41-29-33(47)26-25(28-36(29)54-24(43)15-40-28)27-35(21(6)32(26)46)53-39(8,37(27)48)51-14-13-23(50-9)18(3)34(52-22(7)42)20(5)31(45)19(4)30(16)44/h10-16,18-20,23,30-31,34,44-47H,1-9H3,(H,41,49)/b11-10-,14-13-,17-12-/t16-,18-,19+,20-,23+,30-,31-,34-,39-/m1/s1

> <INCHI_KEY>
CIKJBUUPPXVFDE-CNRRRCGHSA-N

> <FORMULA>
C39H46N2O12S

> <MOLECULAR_WEIGHT>
766.86

> <EXACT_MASS>
766.277146103

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
100

> <JCHEM_AVERAGE_POLARIZABILITY>
76.73405789334194

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(7R,9E,11S,12R,13S,14R,15R,16S,17R,18R,19E,21Z)-2,15,17,33-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23,28-trioxo-8,34-dioxa-27-thia-24,30-diazapentacyclo[23.7.1.1^{4,7}.0^{5,32}.0^{26,31}]tetratriaconta-1,3,5(32),9,19,21,25(33),26(31),29-nonaen-13-yl acetate

> <ALOGPS_LOGP>
4.38

> <JCHEM_LOGP>
5.260341330000002

> <ALOGPS_LOGS>
-5.10

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.651186374562552

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.961985513060748

> <JCHEM_PKA_STRONGEST_BASIC>
-1.1435455792736264

> <JCHEM_POLAR_SURFACE_AREA>
210.51

> <JCHEM_REFRACTIVITY>
206.93690000000012

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.10e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(7R,9E,11S,12R,13S,14R,15R,16S,17R,18R,19E,21Z)-2,15,17,33-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23,28-trioxo-8,34-dioxa-27-thia-24,30-diazapentacyclo[23.7.1.1^{4,7}.0^{5,32}.0^{26,31}]tetratriaconta-1,3,5(32),9,19,21,25(33),26(31),29-nonaen-13-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      22.983   3.576   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      23.208   2.041   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      23.028   0.502   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      22.457  -0.938   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      21.534  -2.179   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      20.323  -3.139   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      18.906  -3.756   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.378  -4.002   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      15.829  -3.873   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      15.548  -5.387   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0      14.327  -3.435   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0      13.634  -2.802   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.459  -1.325   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.294   0.207   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.408   1.270   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.218   0.460   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.290  -2.030   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.552  -2.524   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      10.226   0.654   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.123   2.200   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.398   3.134   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.786   2.455   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      13.889   3.602   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      15.410   3.356   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      13.210   5.027   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      14.209   6.307   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      15.462   7.321   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      16.983   7.752   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      18.554   7.678   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      20.045   7.169   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      21.374   6.232   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      22.365   5.001   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      23.684   5.797   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      22.427   7.356   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      21.981   8.830   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      20.482   9.180   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      23.035   9.953   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      20.744   8.541   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      18.842   9.190   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      17.676  10.196   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      11.650   4.711   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      12.400   6.337   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       8.727   2.851   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       8.942  -0.196   0.000  0.00  0.00           O+0
HETATM   45  N   UNK     0      12.886   0.830   0.000  0.00  0.00           N+0
HETATM   46  C   UNK     0      11.642  -0.079   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      11.807  -1.610   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      10.341  -1.137   0.000  0.00  0.00           O+0
HETATM   49  S   UNK     0      13.215  -2.233   0.000  0.00  0.00           S+0
HETATM   50  C   UNK     0      17.437  -5.541   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      23.802  -1.688   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      24.521   0.125   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      24.748   2.063   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0      24.464   3.997   0.000  0.00  0.00           O+0
CONECT    1    2   32   54                                                  
CONECT    2    1    3   53                                                  
CONECT    3    2    4   52                                                  
CONECT    4    3    5   51                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   50                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14   49                                                  
CONECT   14   13   15   45                                                  
CONECT   15   14   16   22                                                  
CONECT   16   15   17   19                                                  
CONECT   17   16   12   18                                                  
CONECT   18   17                                                            
CONECT   19   16   20   44                                                  
CONECT   20   19   21   43                                                  
CONECT   21   20   22   41                                                  
CONECT   22   21   15   23                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   41   42                                             
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   39                                                  
CONECT   30   29   31   38                                                  
CONECT   31   30   32   34                                                  
CONECT   32   31    1   33                                                  
CONECT   33   32                                                            
CONECT   34   31   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35                                                            
CONECT   38   30                                                            
CONECT   39   29   40                                                       
CONECT   40   39                                                            
CONECT   41   25   21                                                       
CONECT   42   25                                                            
CONECT   43   20                                                            
CONECT   44   19                                                            
CONECT   45   14   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   13                                                       
CONECT   50    8                                                            
CONECT   51    4                                                            
CONECT   52    3                                                            
CONECT   53    2                                                            
CONECT   54    1                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  116    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₉H₄₆N₂O₁₂S

Average Mass

766.8600 Da

Monoisotopic Mass

766.27715 Da

IUPAC Name

(7R,9E,11S,12R,13S,14R,15R,16S,17R,18R,19E,21Z)-2,15,17,33-tetrahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-6,23,28-trioxo-8,34-dioxa-27-thia-24,30-diazapentacyclo[23.7.1.1^{4,7}.0^{5,32}.0^{26,31}]tetratriaconta-1,3,5(32),9,19,21,25(33),26(31),29-nonaen-13-yl acetate

Traditional Name

CAS Registry Number

Not Available

SMILES

CO[C@H]1\C=C/O[C@]2(C)OC3=C(C)C(O)=C4C(O)=C(NC(=O)\C(C)=C/C=C\[C@@H](C)[C@@H](O)[C@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)C1=C(N=CC(=O)S1)C4=C3C2=O

InChI Identifier

InChI=1S/C39H46N2O12S/c1-16-11-10-12-17(2)38(49)41-29-33(47)26-25(28-36(29)54-24(43)15-40-28)27-35(21(6)32(26)46)53-39(8,37(27)48)51-14-13-23(50-9)18(3)34(52-22(7)42)20(5)31(45)19(4)30(16)44/h10-16,18-20,23,30-31,34,44-47H,1-9H3,(H,41,49)/b11-10-,14-13-,17-12-/t16-,18-,19+,20-,23+,30-,31-,34-,39-/m1/s1

InChI Key

CIKJBUUPPXVFDE-CNRRRCGHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nocardia mediterranea	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.38	ALOGPS
logP	5.26	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	5.96	ChemAxon
pKa (Strongest Basic)	-1.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	210.51 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	206.94 m³·mol⁻¹	ChemAxon
Polarizability	76.73 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Rifamycin verde (NP0062098)

MOL for NP0062098 (Rifamycin verde)

3D MOL for NP0062098 (Rifamycin verde)

3D SDF for NP0062098 (Rifamycin verde)

3D-SDF for NP0062098 (Rifamycin verde)

PDB for NP0062098 (Rifamycin verde)

3D PDB for NP0062098 (Rifamycin verde)

SMILES for NP0062098 (Rifamycin verde)

INCHI for NP0062098 (Rifamycin verde)

Structure for NP0062098 (Rifamycin verde)

3D Structure for NP0062098 (Rifamycin verde)