NP-MRD: Showing NP-Card for beta-Vetivenene (NP0061563)

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Record Information

Version

2.0

Created at

2022-04-28 06:20:06 UTC

Updated at

2022-04-28 06:20:06 UTC

NP-MRD ID

NP0061563

Secondary Accession Numbers

None

Natural Product Identification

Common Name

beta-Vetivenene

Description

Beta-Vetivenene, also known as β-vetivenene, belongs to the class of organic compounds known as eremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids. These are sesquiterpenoids with a structure based either on the eremophilane skeleton, its 8,9-seco derivative, or the furoeremophilane skeleton. Eremophilanes have been shown to be derived from eudesmanes by migration of the methyl group at C-10 to C-5. Beta-Vetivenene is possibly neutral. beta-Vetivenene is found in Vetiveria sp. These are monoterpenes containing exactly 2 rings, which are fused to each other.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 38  0  0  0  0  0  0  0  0999 V2000
    3.0685   -0.3807    1.6114 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7828   -0.4435    0.1583 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8853   -0.7157   -0.8036 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5686   -0.2657   -0.3387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2802   -0.3281   -1.7915 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2002    0.6952   -2.0341 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8134    0.8343   -1.2079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8542    1.8277   -1.4503 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9933    1.7877   -0.7859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1665    0.7027    0.2045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8938    0.5530    0.9697 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0262   -0.2584    2.2130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8793   -0.0519   -0.0016 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2914   -1.4485   -0.3380 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4663    0.0088    0.6551 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7830   -1.3495    2.1125 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4669    0.4279    2.1065 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1372   -0.1701    1.7964 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6513   -1.5811   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0528    0.1469   -1.4462 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8186   -0.9800   -0.2732 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0082   -1.3147   -2.1569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1806    0.0319   -2.3342 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2326    1.3426   -2.8971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7308    2.6258   -2.1773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7674    2.5284   -0.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3057   -0.2413   -0.3897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0578    0.8467    0.8455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5267    1.5662    1.2229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0241    0.4230    3.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0207   -0.7608    2.2233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2438   -1.0048    2.3557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6719   -1.5349   -1.3958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1195   -1.7685    0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4228   -2.1201   -0.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6469    1.0394    1.0323 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5793   -0.6697    1.5056 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 12  1  0
 11 10  1  0
 10  9  1  0
  9  8  2  0
  8  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  1  0
  4 15  1  0
 15 13  1  0
 13 14  1  6
  4  2  2  3
  2  1  1  0
  2  3  1  0
 13 11  1  0
 13  7  1  0
 11 29  1  1
 12 30  1  0
 12 31  1  0
 12 32  1  0
 10 27  1  0
 10 28  1  0
  9 26  1  0
  8 25  1  0
  6 24  1  0
  5 22  1  0
  5 23  1  0
 15 36  1  0
 15 37  1  0
 14 33  1  0
 14 34  1  0
 14 35  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
M  END


  Mrv0541 03071314332D          

 16 17  0  0  0  0            999 V2000
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  7  5  2  0  0  0  0
  9  8  1  0  0  0  0
 11  1  1  0  0  0  0
 11  2  1  0  0  0  0
 12  3  1  6  0  0  0
 12  6  1  0  0  0  0
 13  8  1  0  0  0  0
 13 10  1  0  0  0  0
 13 11  2  0  0  0  0
 14  7  1  0  0  0  0
 14  9  2  0  0  0  0
 15  4  1  6  0  0  0
 15 10  1  0  0  0  0
 15 12  1  0  0  0  0
 15 14  1  0  0  0  0
 12 16  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0061563

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]1(C)CC=CC2=CCC(C[C@@]12C)=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H22/c1-11(2)13-8-9-14-7-5-6-12(3)15(14,4)10-13/h5,7,9,12H,6,8,10H2,1-4H3/t12-,15+/m1/s1

> <INCHI_KEY>
QSUQBXKPPUWLTH-DOMZBBRYSA-N

> <FORMULA>
C15H22

> <MOLECULAR_WEIGHT>
202.3352

> <EXACT_MASS>
202.172150704

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_AVERAGE_POLARIZABILITY>
25.441172888223566

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(8R,8aS)-8,8a-dimethyl-2-(propan-2-ylidene)-1,2,3,7,8,8a-hexahydronaphthalene

> <ALOGPS_LOGP>
5.72

> <JCHEM_LOGP>
4.055796239999999

> <ALOGPS_LOGS>
-3.74

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0

> <JCHEM_REFRACTIVITY>
69.3749

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.66e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,8aS)-1,8a-dimethyl-7-(propan-2-ylidene)-1,2,6,8-tetrahydronaphthalene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-MAR-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-MAR-13         0                                  
HETATM    1  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   16  H   UNK     0       2.667  -1.540   0.000  0.00  0.00           H+0
CONECT    1   11                                                            
CONECT    2   11                                                            
CONECT    3   12                                                            
CONECT    4   15                                                            
CONECT    5    6    7                                                       
CONECT    6    5   12                                                       
CONECT    7    5   14                                                       
CONECT    8    9   13                                                       
CONECT    9    8   14                                                       
CONECT   10   13   15                                                       
CONECT   11    1    2   13                                                  
CONECT   12    3    6   15   16                                             
CONECT   13    8   10   11                                                  
CONECT   14    7    9   15                                                  
CONECT   15    4   10   12   14                                             
CONECT   16   12                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Value	Source
b-Vetivenene	Generator
Β-vetivenene	Generator

Chemical Formula

C₁₅H₂₂

Average Mass

202.3352 Da

Monoisotopic Mass

202.17215 Da

IUPAC Name

(8R,8aS)-8,8a-dimethyl-2-(propan-2-ylidene)-1,2,3,7,8,8a-hexahydronaphthalene

Traditional Name

(1R,8aS)-1,8a-dimethyl-7-(propan-2-ylidene)-1,2,6,8-tetrahydronaphthalene

CAS Registry Number

Not Available

SMILES

[H][C@@]1(C)CC=CC2=CCC(C[C@@]12C)=C(C)C

InChI Identifier

InChI=1S/C15H22/c1-11(2)13-8-9-14-7-5-6-12(3)15(14,4)10-13/h5,7,9,12H,6,8,10H2,1-4H3/t12-,15+/m1/s1

InChI Key

QSUQBXKPPUWLTH-DOMZBBRYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vetiveria sp.	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids. These are sesquiterpenoids with a structure based either on the eremophilane skeleton, its 8,9-seco derivative, or the furoeremophilane skeleton. Eremophilanes have been shown to be derived from eudesmanes by migration of the methyl group at C-10 to C-5.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Eremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids

Alternative Parents

Substituents

Eremophilane sesquiterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.72	ALOGPS
logP	4.06	ChemAxon
logS	-3.7	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	69.37 m³·mol⁻¹	ChemAxon
Polarizability	25.44 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0059857

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14475467

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for beta-Vetivenene (NP0061563)

MOL for NP0061563 (beta-Vetivenene)

3D MOL for NP0061563 (beta-Vetivenene)

3D SDF for NP0061563 (beta-Vetivenene)

3D-SDF for NP0061563 (beta-Vetivenene)

PDB for NP0061563 (beta-Vetivenene)

3D PDB for NP0061563 (beta-Vetivenene)

SMILES for NP0061563 (beta-Vetivenene)

INCHI for NP0061563 (beta-Vetivenene)

Structure for NP0061563 (beta-Vetivenene)

3D Structure for NP0061563 (beta-Vetivenene)