NP-MRD: Showing NP-Card for Antibiotic HP 530C2 (NP0061528)

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Record Information

Version

2.0

Created at

2022-04-28 06:18:18 UTC

Updated at

2022-04-28 06:18:19 UTC

NP-MRD ID

NP0061528

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Antibiotic HP 530C2

Description

(2R,3S,4R,6S)-4-(dimethylamino)-6-{8-[(2S,4S,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]-2-[(2S,4E)-hex-4-en-2-yl]-11-hydroxy-5-methyl-4,7,12-trioxo-7,12-dihydro-4H-1-oxatetraphen-10-yl}-2,4-dimethyloxan-3-yl acetate belongs to the class of organic compounds known as anthraquinones. These are organic compounds containing either anthracene-9,10-quinone, 1,4-anthraquinone, or 1,2-anthraquinone. Antibiotic HP 530C2 is found in Streptomyces sp. HP530. Based on a literature review very few articles have been published on (2R,3S,4R,6S)-4-(dimethylamino)-6-{8-[(2S,4S,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]-2-[(2S,4E)-hex-4-en-2-yl]-11-hydroxy-5-methyl-4,7,12-trioxo-7,12-dihydro-4H-1-oxatetraphen-10-yl}-2,4-dimethyloxan-3-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282208182D          

 55 60  0  0  1  0            999 V2000
    5.0352   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647    2.1275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.9716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3657    1.6598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744   -1.1466    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.7702    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6358   -1.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9058   -2.0821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7159   -2.2380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9860   -3.0175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352    1.9716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4951    2.5952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    3.3748    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5753    3.5307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1154    2.9071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8453    2.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255    3.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8453    4.3103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251    3.9984    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4951    4.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    3.8425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5753   -0.8348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3854   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255   -1.3025    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6555   -2.0821    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8453   -2.2380    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3052   -1.6143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9729   -3.0531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2409   -2.7995    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4524   -2.5568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4250   -3.6037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1955   -2.7057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255   -3.4853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4656   -4.1089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1154   -3.6412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7356   -1.1466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  2  0  0  0  0
 11 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 10 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  2  0  0  0  0
 19 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 15 29  1  0  0  0  0
 30  3  1  6  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 30 35  1  0  0  0  0
 34 36  1  1  0  0  0
 33 37  1  1  0  0  0
 32 38  1  6  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 41  1  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 41 46  1  0  0  0  0
 45 47  1  1  0  0  0
 45 48  1  6  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 44 51  1  1  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 52 54  1  0  0  0  0
 43 55  1  6  0  0  0
M  END

     RDKit          3D

109114  0  0  0  0  0  0  0  0999 V2000
    7.2166   -3.4579   -3.5414 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9938   -3.7089   -2.0831 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.9432   -2.3579    2.4653 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6823   -0.6851    0.6649 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6152    0.3060    0.4805 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2358    1.6198    0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0785    2.5250    0.0309 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8812    1.8713    0.1145 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4542    3.1591   -0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4307    4.2531   -0.3606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0872    3.3728   -0.2344 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6308    1.0530    0.2328 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.4010   -0.4176    0.5794 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1463   -1.1443    0.6675 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2088    0.2180    0.3391 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3117   -0.8240    0.5326 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.0637   -0.5672    0.4505 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5514    1.7593   -0.0162 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9035    4.5894   -0.5370 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.1904    6.3651    0.3371 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7614    4.1309    0.9102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5711    4.8956   -1.9675 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.8429    6.0875   -2.1112 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6931    3.7887   -2.4998 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.6950    3.5144   -1.6284 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0831    6.3629    1.4378 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7582    4.5756    1.1869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9438    3.1085    0.5863 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1075    6.1533   -1.4544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2842    2.9010   -2.8248 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6671    3.3523   -4.3068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1475    4.9428   -3.5256 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7687    4.7562   -4.3864 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 54  1  0
 54 55  2  0
 54 53  1  0
 53 41  2  0
 41 40  1  0
 40 24  2  0
 24 25  1  0
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 27 28  1  0
 27 32  1  0
 32 33  1  0
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 34 35  1  0
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 32 37  1  0
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 27 29  1  1
 29 30  1  0
 29 31  1  0
 24 22  1  0
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 22 21  2  0
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 19 16  1  0
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 41 42  1  0
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 52 42  1  0
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 39 25  1  0
  1 56  1  0
  1 57  1  0
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  2 59  1  0
  3 60  1  0
  4 61  1  0
  4 62  1  0
  5 63  1  6
  6 64  1  0
  6 65  1  0
  6 66  1  0
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 13 68  1  0
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 13 70  1  0
 14 71  1  0
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 25 73  1  6
 26 74  1  0
 26 75  1  0
 28 76  1  0
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 28 78  1  0
 32 85  1  6
 35 86  1  0
 35 87  1  0
 35 88  1  0
 37 89  1  1
 38 90  1  0
 38 91  1  0
 38 92  1  0
 30 79  1  0
 30 80  1  0
 30 81  1  0
 31 82  1  0
 31 83  1  0
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 23 72  1  0
 42 94  1  1
 43 95  1  0
 43 96  1  0
 44 97  1  1
 48104  1  6
 49105  1  0
 50106  1  6
 51107  1  0
 51108  1  0
 51109  1  0
 46 98  1  0
 46 99  1  0
 46100  1  0
 47101  1  0
 47102  1  0
 47103  1  0
M  END


  Mrv1652304282208182D          

 55 60  0  0  1  0            999 V2000
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    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2546    1.9716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.9058   -2.0821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7159   -2.2380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9860   -3.0175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352    1.9716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4951    2.5952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    3.3748    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5753    3.5307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1154    2.9071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8453    2.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255    3.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8453    4.3103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251    3.9984    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4951    4.7780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    3.8425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5753   -0.8348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3854   -0.6789    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255   -1.3025    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6555   -2.0821    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8453   -2.2380    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3052   -1.6143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9729   -3.0531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2409   -2.7995    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4524   -2.5568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4250   -3.6037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1955   -2.7057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9255   -3.4853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4656   -4.1089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1154   -3.6412    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7356   -1.1466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  2  0  0  0  0
 11 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 10 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  2  0  0  0  0
 19 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 15 29  1  0  0  0  0
 30  3  1  6  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 30 35  1  0  0  0  0
 34 36  1  1  0  0  0
 33 37  1  1  0  0  0
 32 38  1  6  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 41  1  1  1  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 41 46  1  0  0  0  0
 45 47  1  1  0  0  0
 45 48  1  6  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 44 51  1  1  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 52 54  1  0  0  0  0
 43 55  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0061528

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C\C[C@H](C)C1=CC(=O)C2=C(C)C=C3C(=O)C4=C(C=C([C@@H]5C[C@](C)([C@H](OC(C)=O)[C@@H](C)O5)N(C)C)C(O)=C4C(=O)C3=C2O1)[C@@H]1C[C@@H]([C@@H](O)[C@@H](C)O1)N(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C43H54N2O10/c1-12-13-14-20(2)30-18-29(47)33-21(3)15-27-35(41(33)55-30)40(51)36-34(39(27)50)25(31-17-28(44(8)9)37(48)22(4)52-31)16-26(38(36)49)32-19-43(7,45(10)11)42(23(5)53-32)54-24(6)46/h12-13,15-16,18,20,22-23,28,31-32,37,42,48-49H,14,17,19H2,1-11H3/b13-12+/t20-,22+,23+,28-,31-,32-,37-,42+,43+/m0/s1

> <INCHI_KEY>
VJRBWRXAMBANIM-GMCXQTDZSA-N

> <FORMULA>
C43H54N2O10

> <MOLECULAR_WEIGHT>
758.909

> <EXACT_MASS>
758.377845947

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
109

> <JCHEM_AVERAGE_POLARIZABILITY>
84.4806379059147

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4R,6S)-4-(dimethylamino)-6-{8-[(2S,4S,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]-2-[(2S,4E)-hex-4-en-2-yl]-11-hydroxy-5-methyl-4,7,12-trioxo-7,12-dihydro-4H-1-oxatetraphen-10-yl}-2,4-dimethyloxan-3-yl acetate

> <ALOGPS_LOGP>
4.61

> <JCHEM_LOGP>
4.666975375246154

> <ALOGPS_LOGS>
-4.77

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.587938723339263

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.890788419244554

> <JCHEM_PKA_STRONGEST_BASIC>
8.025959958209695

> <JCHEM_POLAR_SURFACE_AREA>
152.14

> <JCHEM_REFRACTIVITY>
211.33579999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.30e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4R,6S)-4-(dimethylamino)-6-{8-[(2S,4S,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]-2-[(2S,4E)-hex-4-en-2-yl]-11-hydroxy-5-methyl-4,7,12-trioxo-1-oxatetraphen-10-yl}-2,4-dimethyloxan-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       9.399  -0.394   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.903   1.061   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.895   2.225   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.383   1.934   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.879   0.479   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.887  -0.685   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       7.383  -2.140   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.366   0.188   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.862  -1.267   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.358   1.352   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.862   2.807   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.375   3.098   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.879   4.553   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.854   3.971   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.342   3.680   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.838   2.225   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.846   1.061   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       2.342  -0.394   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.830  -0.685   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.179   0.479   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.326   1.934   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.683   3.098   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.326  -2.140   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.334  -3.304   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.187  -2.431   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.691  -3.887   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.203  -4.178   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -3.707  -5.633   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.334   4.844   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.399   3.680   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.391   4.844   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.895   6.300   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.407   6.591   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      11.415   5.427   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      10.911   3.971   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      12.928   5.718   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      10.911   8.046   0.000  0.00  0.00           O+0
HETATM   38  N   UNK     0       7.887   7.464   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0       8.391   8.919   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.375   7.173   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      10.407  -1.558   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      11.919  -1.267   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      12.928  -2.431   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      12.424  -3.887   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      10.911  -4.178   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       9.903  -3.013   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      11.149  -5.699   0.000  0.00  0.00           C+0
HETATM   48  N   UNK     0       9.783  -5.226   0.000  0.00  0.00           N+0
HETATM   49  C   UNK     0       8.311  -4.773   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      10.127  -6.727   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      13.432  -5.051   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      12.928  -6.506   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      13.936  -7.670   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      11.415  -6.797   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      14.440  -2.140   0.000  0.00  0.00           C+0
CONECT    1    2    6   41                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4   30                                                  
CONECT    4    3    5   12                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   17                                                  
CONECT   11   10   12   14                                                  
CONECT   12   11    4   13                                                  
CONECT   13   12                                                            
CONECT   14   11   15                                                       
CONECT   15   14   16   29                                                  
CONECT   16   15   17   21                                                  
CONECT   17   16   10   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21                                                       
CONECT   21   20   16   22                                                  
CONECT   22   21                                                            
CONECT   23   19   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   15                                                            
CONECT   30    3   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   38                                                  
CONECT   33   32   34   37                                                  
CONECT   34   33   35   36                                                  
CONECT   35   34   30                                                       
CONECT   36   34                                                            
CONECT   37   33                                                            
CONECT   38   32   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41    1   42   46                                                  
CONECT   42   41   43                                                       
CONECT   43   42   44   55                                                  
CONECT   44   43   45   51                                                  
CONECT   45   44   46   47   48                                             
CONECT   46   45   41                                                       
CONECT   47   45                                                            
CONECT   48   45   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48                                                            
CONECT   51   44   52                                                       
CONECT   52   51   53   54                                                  
CONECT   53   52                                                            
CONECT   54   52                                                            
CONECT   55   43                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  120    0
END

View in JSmol

Synonyms

Value	Source
(2R,3S,4R,6S)-4-(Dimethylamino)-6-{8-[(2S,4S,5R,6R)-4-(dimethylamino)-5-hydroxy-6-methyloxan-2-yl]-2-[(2S,4E)-hex-4-en-2-yl]-11-hydroxy-5-methyl-4,7,12-trioxo-7,12-dihydro-4H-1-oxatetraphen-10-yl}-2,4-dimethyloxan-3-yl acetic acid	Generator

Chemical Formula

C₄₃H₅₄N₂O₁₀

Average Mass

758.9090 Da

Monoisotopic Mass

758.37785 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C\C=C\C[C@H](C)C1=CC(=O)C2=C(C)C=C3C(=O)C4=C(C=C([C@@H]5C[C@](C)([C@H](OC(C)=O)[C@@H](C)O5)N(C)C)C(O)=C4C(=O)C3=C2O1)[C@@H]1C[C@@H]([C@@H](O)[C@@H](C)O1)N(C)C

InChI Identifier

InChI=1S/C43H54N2O10/c1-12-13-14-20(2)30-18-29(47)33-21(3)15-27-35(41(33)55-30)40(51)36-34(39(27)50)25(31-17-28(44(8)9)37(48)22(4)52-31)16-26(38(36)49)32-19-43(7,45(10)11)42(23(5)53-32)54-24(6)46/h12-13,15-16,18,20,22-23,28,31-32,37,42,48-49H,14,17,19H2,1-11H3/b13-12+/t20-,22+,23+,28-,31-,32-,37-,42+,43+/m0/s1

InChI Key

VJRBWRXAMBANIM-GMCXQTDZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. HP530	Bacteria	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anthraquinones. These are organic compounds containing either anthracene-9,10-quinone, 1,4-anthraquinone, or 1,2-anthraquinone.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Anthraquinone
9,10-anthraquinone
Naphthopyranone
Naphthopyran
Chromone
1-benzopyran
Benzopyran
Aryl ketone
Aralkylamine
Pyranone
Pyran
Oxane
Heteroaromatic compound
Vinylogous acid
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Ketone
Carboxylic acid ester
Amino acid or derivatives
1,2-aminoalcohol
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.61	ALOGPS
logP	4.67	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	6.89	ChemAxon
pKa (Strongest Basic)	8.03	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	152.14 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	211.34 m³·mol⁻¹	ChemAxon
Polarizability	84.48 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163016859

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Antibiotic HP 530C2 (NP0061528)

MOL for NP0061528 (Antibiotic HP 530C2)

3D MOL for NP0061528 (Antibiotic HP 530C2)

3D SDF for NP0061528 (Antibiotic HP 530C2)

3D-SDF for NP0061528 (Antibiotic HP 530C2)

PDB for NP0061528 (Antibiotic HP 530C2)

3D PDB for NP0061528 (Antibiotic HP 530C2)

SMILES for NP0061528 (Antibiotic HP 530C2)

INCHI for NP0061528 (Antibiotic HP 530C2)

Structure for NP0061528 (Antibiotic HP 530C2)

3D Structure for NP0061528 (Antibiotic HP 530C2)