NP-MRD: Showing NP-Card for Gnetin D (NP0061299)

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Record Information

Version

2.0

Created at

2022-04-28 06:08:39 UTC

Updated at

2025-05-24 00:05:35 UTC

NP-MRD ID

NP0061299

Natural Product DOI

https://doi.org/10.57994/1413

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gnetin D

Description

4-[(2R,3S)-3-(3,5-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-2-yl]benzene-1,3-diol belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. Gnetin D is found in Gnetum latifolium Blume and Gnetum leyboldii. Based on a literature review very few articles have been published on 4-[(2R,3S)-3-(3,5-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-2-yl]benzene-1,3-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282208082D          

 35 39  0  0  1  0            999 V2000
   -0.9083    2.3234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1014    2.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1536    1.3672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984    0.7541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2054    0.9256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4604    1.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2673    1.8818    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -0.0305    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6284   -0.6979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4534   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8659    0.0165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6909    0.0165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1034   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6909   -1.4124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8659   -1.4124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4534   -2.1269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9284   -0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -1.3654    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4990   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2135   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9279   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6424   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6424   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9279   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2135   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3569   -2.7604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.9521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4507    2.7649    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  4  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 13 17  1  0  0  0  0
  9 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
  8 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
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 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 26 31  1  0  0  0  0
 29 32  1  0  0  0  0
 23 33  2  0  0  0  0
 19 33  1  0  0  0  0
 21 34  1  0  0  0  0
  2 35  1  0  0  0  0
M  END

     RDKit          3D

 57 61  0  0  0  0  0  0  0  0999 V2000
    8.7971   -4.6665   -0.0036 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6184   -3.9707    0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2028   -3.2163   -1.0329 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0227   -2.5400   -0.9439 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1929   -2.5516    0.1628 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9498   -1.7949    0.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0884   -1.7261    1.1422 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8436   -0.9681    1.1411 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0273   -0.9817    2.2523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1628   -0.2803    2.3037 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9683   -0.3059    3.4270 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5772    0.4649    1.2318 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2145    0.5006    0.1054 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4211   -0.2173    0.0682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4244    1.3205   -0.8306 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2467    2.2057   -0.1122 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1875    2.9943   -0.8817 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5055    3.0967   -0.4993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4484    3.8448   -1.1928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9949    4.5041   -2.3189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9167    5.2639   -3.0383 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6827    4.4102   -2.7102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7675    3.6669   -2.0128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4220    3.5791   -2.4267 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7890    1.3293    0.9566 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8613    0.4192    0.5866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0771    0.0710   -0.7202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1104   -0.7975   -1.0391 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3249   -1.1474   -2.3689 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9318   -1.3242   -0.0719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7255   -0.9826    1.2436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5527   -1.5131    2.2162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6843   -0.1089    1.5525 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6227   -3.3093    1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8245   -4.0103    1.1628 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7028   -4.3340    0.2741 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8059   -3.1606   -1.9391 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6928   -1.9382   -1.8044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7085   -1.2309   -0.7305 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3327   -2.2903    2.0350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3496   -1.5757    3.1182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7611   -0.8125    4.2555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0102   -0.1713   -0.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5128    2.9040    0.4102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9170    2.5984    0.3941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4760    3.9070   -0.8707 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0051    6.2376   -2.7555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3126    4.9342   -3.6094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1639    4.0799   -3.2464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0354    1.9488    1.8382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4567    0.4583   -1.5361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9386   -0.5928   -2.9220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7531   -2.0111   -0.2951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2923   -2.3918    2.6522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5632    0.1283    2.6069 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0165   -3.3634    2.1328 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1047   -4.5824    2.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8 14  2  0
 14 13  1  0
 13 12  2  0
 12 25  1  0
 25 16  1  0
 16 15  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
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 28 30  2  0
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 31 32  1  0
 31 33  2  0
 12 10  1  0
 10 11  1  0
 10  9  2  0
  5 34  1  0
 34 35  2  0
 35  2  1  0
  9  8  1  0
 15 13  1  0
 23 17  1  0
 33 26  1  0
  1 36  1  0
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  4 38  1  0
  6 39  1  0
  7 40  1  0
 14 43  1  0
 25 50  1  1
 16 44  1  1
 18 45  1  0
 19 46  1  0
 21 47  1  0
 22 48  1  0
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 27 51  1  0
 29 52  1  0
 30 53  1  0
 32 54  1  0
 33 55  1  0
 11 42  1  0
  9 41  1  0
 34 56  1  0
 35 57  1  0
M  END


  Mrv1652304282208082D          

 35 39  0  0  1  0            999 V2000
   -0.9083    2.3234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1014    2.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1536    1.3672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984    0.7541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2054    0.9256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4604    1.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2673    1.8818    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -0.0305    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6284   -0.6979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4534   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8659    0.0165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6909    0.0165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8659   -1.4124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4534   -2.1269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.6411   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4990   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2135   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9279   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6424   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6424   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9279   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2135   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3569   -2.7604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.9521    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4507    2.7649    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
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 29 32  1  0  0  0  0
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 19 33  1  0  0  0  0
 21 34  1  0  0  0  0
  2 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0061299

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C(\C=C\C2=CC3=C([C@@H]([C@@H](O3)C3=CC=C(O)C=C3O)C3=CC(O)=CC(O)=C3)C(O)=C2)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C28H22O7/c29-18-5-3-15(4-6-18)1-2-16-9-24(34)27-25(10-16)35-28(22-8-7-19(30)14-23(22)33)26(27)17-11-20(31)13-21(32)12-17/h1-14,26,28-34H/b2-1+/t26-,28-/m0/s1

> <INCHI_KEY>
SEFNUEXMMDHMHO-ZIPUULGTSA-N

> <FORMULA>
C28H22O7

> <MOLECULAR_WEIGHT>
470.477

> <EXACT_MASS>
470.136553048

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
49.03793637656646

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-[(2R,3S)-2-(2,4-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-3-yl]benzene-1,3-diol

> <ALOGPS_LOGP>
4.10

> <JCHEM_LOGP>
5.656929148333334

> <ALOGPS_LOGS>
-5.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.869242461174572

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.441263927032885

> <JCHEM_PKA_STRONGEST_BASIC>
-4.9049424245745605

> <JCHEM_POLAR_SURFACE_AREA>
130.61

> <JCHEM_REFRACTIVITY>
132.0204

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.74e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(2R,3S)-2-(2,4-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-3-yl]benzene-1,3-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.696   4.337   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.189   4.017   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.287   2.552   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.744   1.408   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.250   1.728   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.726   3.192   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -4.232   3.513   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.268  -0.057   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.173  -1.303   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.713  -1.303   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.483   0.031   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.023   0.031   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.793  -1.303   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.023  -2.637   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.483  -2.637   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.713  -3.970   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -7.333  -1.303   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      -0.268  -2.549   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.197  -2.073   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.197  -0.533   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.530   0.237   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.864  -0.533   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.864  -2.073   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.198  -2.843   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.531  -2.073   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.865  -2.843   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.199  -2.073   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.533  -2.843   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.533  -4.383   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.199  -5.153   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.865  -4.383   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      11.866  -5.153   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       2.530  -2.843   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.530   1.777   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       0.841   5.161   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   35                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9   20                                                  
CONECT    9    8   10   18                                                  
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   10   16                                                  
CONECT   16   15                                                            
CONECT   17   13                                                            
CONECT   18    9   19                                                       
CONECT   19   18   20   33                                                  
CONECT   20   19    8   21                                                  
CONECT   21   20   22   34                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   33                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30   26                                                       
CONECT   32   29                                                            
CONECT   33   23   19                                                       
CONECT   34   21                                                            
CONECT   35    2                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₂₂O₇

Average Mass

470.4770 Da

Monoisotopic Mass

470.13655 Da

IUPAC Name

5-[(2R,3S)-2-(2,4-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-3-yl]benzene-1,3-diol

Traditional Name

5-[(2R,3S)-2-(2,4-dihydroxyphenyl)-4-hydroxy-6-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-3-yl]benzene-1,3-diol

CAS Registry Number

Not Available

SMILES

OC1=CC=C(\C=C\C2=CC3=C([C@@H]([C@@H](O3)C3=CC=C(O)C=C3O)C3=CC(O)=CC(O)=C3)C(O)=C2)C=C1

InChI Identifier

InChI=1S/C28H22O7/c29-18-5-3-15(4-6-18)1-2-16-9-24(34)27-25(10-16)35-28(22-8-7-19(30)14-23(22)33)26(27)17-11-20(31)13-21(32)12-17/h1-14,26,28-34H/b2-1+/t26-,28-/m0/s1

InChI Key

SEFNUEXMMDHMHO-ZIPUULGTSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C2D6OS, experimental)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600.17 MHz, C2D6OS, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600, C2D6OS, simulated)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2025-05-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600.17, C2D6OS, simulated)	olivier.kirchhoffer@unige.ch	University of Geneva	Olivier Kirchhoffer	2024-05-01	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Gnetum edule		Not Available
Gnetum edule		Not Available
Gnetum latifolium	Plant	KNApSAcK
Gnetum leyboldii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

2-arylbenzofuran flavonoids

Sub Class

Not Available

Direct Parent

2-arylbenzofuran flavonoids

Alternative Parents

Substituents

2-arylbenzofuran flavonoid
Linear 1,7-diphenylheptane skeleton
1-phenylcoumaran
Stilbene
Coumaran
Styrene
Resorcinol
1-hydroxy-2-unsubstituted benzenoid
Phenol
1-hydroxy-4-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Monocyclic benzene moiety
Oxacycle
Organoheterocyclic compound
Ether
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.1	ALOGPS
logP	5.66	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	8.44	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	130.61 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	132.02 m³·mol⁻¹	ChemAxon
Polarizability	49.04 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10183764

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21575178

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Gnetin D (NP0061299)

MOL for NP0061299 (Gnetin D)

3D MOL for NP0061299 (Gnetin D)

3D SDF for NP0061299 (Gnetin D)

3D-SDF for NP0061299 (Gnetin D)

PDB for NP0061299 (Gnetin D)

3D PDB for NP0061299 (Gnetin D)

SMILES for NP0061299 (Gnetin D)

INCHI for NP0061299 (Gnetin D)

Structure for NP0061299 (Gnetin D)

3D Structure for NP0061299 (Gnetin D)