NP-MRD: Showing NP-Card for 2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene (NP0061084)

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Record Information

Version

2.0

Created at

2022-04-28 06:00:24 UTC

Updated at

2022-04-28 06:00:24 UTC

NP-MRD ID

NP0061084

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene

Description

Coelonin belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation. 2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene is found in Bletilla striata , Bulbophyllum reptans, Bulbophyllum vaginatum, Calanthe arisanensis, Coelogyne elata, Coelogyne ochracea, Coelogyne stricta, Cymbidium aloifolium , Dendrobium amplum, Dendrobium longicornu, Dendrobium nobile, Eria flava, Eria lasiopetala, Eulophia nuda , Eulophia petersii , Gymnadenia albida, Gymnadenia conopsea, Pholidota chinensis Lindl. , Pinalia acervata, Pleione bulbocodioides and Scaphyglottis livida. Coelonin is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
    1.9355    3.2983    0.1387 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0651    2.1955    0.1338 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4403    0.8922    0.0233 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8127    0.6135   -0.0975 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2590   -0.6779   -0.2135 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6192   -0.9635   -0.3353 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3372   -1.6938   -0.2077 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9615   -1.4547   -0.0875 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5475   -0.1460    0.0243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9023    0.1443    0.0544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827    1.4177    0.2509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7675    1.6081    0.3465 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6457    0.5531    0.2482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0118    0.8451    0.3579 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1797   -0.7249    0.0508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7968   -0.9232   -0.0471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3845   -2.3112   -0.3320 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0295   -2.5862   -0.0086 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4798    3.3996    1.0985 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3050    4.2071   -0.0632 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6593    3.2581   -0.7004 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4767    1.4605   -0.0933 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1234   -1.1123    0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6262   -2.7348   -0.2959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7666    2.2804    0.3425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1103    2.6199    0.5005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7217    0.1492    0.2997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8871   -1.5355   -0.0229 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0047   -3.0408    0.2891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5888   -2.5761   -1.4067 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0887   -3.0633    1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3837   -3.3984   -0.7297 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
  9  3  1  0
 16 10  1  0
 18  8  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  4 22  1  0
  6 23  1  0
  7 24  1  0
 11 25  1  0
 12 26  1  0
 14 27  1  0
 15 28  1  0
 17 29  1  0
 17 30  1  0
 18 31  1  0
 18 32  1  0
M  END


  Mrv1533004231514262D          

 18 20  0  0  0  0            999 V2000
    4.5079   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9829   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
  3 18  1  0  0  0  0
  8 18  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0061084

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(O)=CC2=C1C1=CC=C(O)C=C1CC2

> <INCHI_IDENTIFIER>
InChI=1S/C15H14O3/c1-18-14-8-12(17)7-10-3-2-9-6-11(16)4-5-13(9)15(10)14/h4-8,16-17H,2-3H2,1H3

> <INCHI_KEY>
OPPGAHUCKDKQJR-UHFFFAOYSA-N

> <FORMULA>
C15H14O3

> <MOLECULAR_WEIGHT>
242.274

> <EXACT_MASS>
242.094294311

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
25.986306555397277

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-methoxy-9,10-dihydrophenanthrene-2,7-diol

> <ALOGPS_LOGP>
2.72

> <JCHEM_LOGP>
3.418786145

> <ALOGPS_LOGS>
-3.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.165104238604446

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.459382795141146

> <JCHEM_PKA_STRONGEST_BASIC>
-4.85734328619262

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
69.89939999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.21e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-methoxy-9,10-dihydrophenanthrene-2,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0       8.415  -4.207   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.875  -4.207   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.255  -1.540   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      13.035  -1.540   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   18                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18                                                  
CONECT   18   17    3    8                                                  
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₄O₃

Average Mass

242.2740 Da

Monoisotopic Mass

242.09429 Da

IUPAC Name

4-methoxy-9,10-dihydrophenanthrene-2,7-diol

Traditional Name

4-methoxy-9,10-dihydrophenanthrene-2,7-diol

CAS Registry Number

Not Available

SMILES

COC1=CC(O)=CC2=C1C1=CC=C(O)C=C1CC2

InChI Identifier

InChI=1S/C15H14O3/c1-18-14-8-12(17)7-10-3-2-9-6-11(16)4-5-13(9)15(10)14/h4-8,16-17H,2-3H2,1H3

InChI Key

OPPGAHUCKDKQJR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bletilla striata	Plant	KNApSAcK
Bulbophyllum reptans	Plant	KNApSAcK
Bulbophyllum vaginatum	Plant	KNApSAcK
Calanthe arisanensis	LOTUS Database	35616633
Coelogyne elata	Plant	KNApSAcK
Coelogyne nitida	Plant	KNApSAcK
Coelogyne stricta	LOTUS Database	35616633
Cymbidium aloifolium	Plant	KNApSAcK
Dendrobium amplum	LOTUS Database	35616633
Dendrobium longicornu	LOTUS Database	35616633
Dendrobium nobile	LOTUS Database	35616633
Eria flava	Plant	KNApSAcK
Eria lasiopetala	LOTUS Database	35616633
Eulophia nuda	Plant	KNApSAcK
Eulophia petersii	Plant	KNApSAcK
Gymnadenia albida	Plant	KNApSAcK
Gymnadenia conopsea	LOTUS Database	35616633
Pholidota chinensis Lindl.	Plant	KNApSAcK
Pinalia acervata	LOTUS Database	35616633
Pleione bulbocodioides	Plant	KNApSAcK
Scaphyglottis livida	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Hydrophenanthrenes

Direct Parent

Hydrophenanthrenes

Alternative Parents

Substituents

Hydrophenanthrene
Naphthalene
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.72	ALOGPS
logP	3.42	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	9.46	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	69.9 m³·mol⁻¹	ChemAxon
Polarizability	25.99 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11390848

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene (NP0061084)

MOL for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

3D MOL for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

3D SDF for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

3D-SDF for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

PDB for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

3D PDB for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

SMILES for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

INCHI for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

Structure for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)

3D Structure for NP0061084 (2,7-Dihydroxy-4-methoxy-9,10-dihydrophenanthrene)