NP-MRD: Showing NP-Card for 2,3,4,6,7-Pentamethoxyphenanthrene (NP0061040)

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Record Information

Version

2.0

Created at

2022-04-28 05:58:55 UTC

Updated at

2022-04-28 05:58:55 UTC

NP-MRD ID

NP0061040

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,3,4,6,7-Pentamethoxyphenanthrene

Description

CHEMBL3314707 belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene. 2,3,4,6,7-Pentamethoxyphenanthrene is found in Tamus communis . Based on a literature review very few articles have been published on CHEMBL3314707.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 46  0  0  0  0  0  0  0  0999 V2000
    5.4305   -2.5026    0.2602 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8952   -1.2180    0.4781 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5350   -1.0183    0.3575 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7170   -2.0734    0.0248 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3553   -1.8807   -0.0989 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5250   -2.9526   -0.3806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8336   -2.8234   -0.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3609   -1.5555   -0.2577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7326   -1.4174   -0.3279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3200   -0.1980   -0.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7022   -0.0311   -0.1874 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5001   -1.1884   -0.4706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5236    0.9061    0.1470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1002    2.1449    0.3533 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4288    3.0683   -0.6646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1259    0.7981    0.2233 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4634    1.9861    0.4863 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2075    2.9207   -0.5845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5765   -0.4357    0.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7917   -0.6086    0.1107 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6498    0.4090    0.4444 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0236    0.2339    0.5730 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7994    1.2908    0.9019 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3883    2.5991    1.1423 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4811   -2.5506    0.6339 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8218   -3.2229    0.8799 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4343   -2.8024   -0.8063 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0753   -3.0741   -0.1527 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9619   -3.9105   -0.5369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4830   -3.6647   -0.6829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3778   -2.2756   -0.5453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5687   -0.9613   -0.4015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2084   -1.9586    0.2939 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1962   -1.5645   -1.4644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0401    4.0915   -0.4447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0638    2.6569   -1.6196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5564    3.1340   -0.7762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6750    3.8956   -0.3429 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8568    3.0196   -0.8321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6978    2.4940   -1.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3073    1.3637    0.6887 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4856    2.5889    1.8119 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0370    3.0219    0.1674 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1704    3.2655    1.5055 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 22  2  0
 22 23  1  0
 23 24  1  0
 22 21  1  0
 21 20  2  0
 20  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  2  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17 18  1  0
 16 19  2  0
  5  4  2  0
  4  3  1  0
 19 20  1  0
 19  8  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
 24 42  1  0
 24 43  1  0
 24 44  1  0
 21 41  1  0
  6 29  1  0
  7 30  1  0
  9 31  1  0
 12 32  1  0
 12 33  1  0
 12 34  1  0
 15 35  1  0
 15 36  1  0
 15 37  1  0
 18 38  1  0
 18 39  1  0
 18 40  1  0
  4 28  1  0
M  END


  Mrv1652304282207582D          

 24 26  0  0  0  0            999 V2000
    3.6020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9355    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3480    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  4 12  1  0  0  0  0
 10 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
  9 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  0  0  0  0
  2 21  1  0  0  0  0
 21 22  1  0  0  0  0
  1 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0061040

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(OC)C=C2C(C=CC3=CC(OC)=C(OC)C(OC)=C23)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O5/c1-20-14-8-11-6-7-12-9-16(22-3)18(23-4)19(24-5)17(12)13(11)10-15(14)21-2/h6-10H,1-5H3

> <INCHI_KEY>
RNTAIKBFRNJDIV-UHFFFAOYSA-N

> <FORMULA>
C19H20O5

> <MOLECULAR_WEIGHT>
328.364

> <EXACT_MASS>
328.131073744

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
35.428391189468925

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,3,4,6,7-pentamethoxyphenanthrene

> <ALOGPS_LOGP>
3.56

> <JCHEM_LOGP>
3.1638430009999996

> <ALOGPS_LOGS>
-5.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.220147110829973

> <JCHEM_POLAR_SURFACE_AREA>
46.150000000000006

> <JCHEM_REFRACTIVITY>
91.27439999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.31e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,3,4,6,7-pentamethoxyphenanthrene

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.414   3.437   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.184   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.874  -1.897   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.414  -1.897   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -0.206   3.437   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.564   4.771   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.516   2.104   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       9.034   0.770   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.494   3.437   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.724   4.771   0.000  0.00  0.00           C+0
CONECT    1    2    6   23                                                  
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    5   10   16                                                  
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11    4                                                       
CONECT   13   10   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15    9                                                       
CONECT   17   15   18                                                       
CONECT   18   17                                                            
CONECT   19   14   20                                                       
CONECT   20   19                                                            
CONECT   21    2   22                                                       
CONECT   22   21                                                            
CONECT   23    1   24                                                       
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₀O₅

Average Mass

328.3640 Da

Monoisotopic Mass

328.13107 Da

IUPAC Name

2,3,4,6,7-pentamethoxyphenanthrene

Traditional Name

2,3,4,6,7-pentamethoxyphenanthrene

CAS Registry Number

Not Available

SMILES

COC1=C(OC)C=C2C(C=CC3=CC(OC)=C(OC)C(OC)=C23)=C1

InChI Identifier

InChI=1S/C19H20O5/c1-20-14-8-11-6-7-12-9-16(22-3)18(23-4)19(24-5)17(12)13(11)10-15(14)21-2/h6-10H,1-5H3

InChI Key

RNTAIKBFRNJDIV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dioscorea communis	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrenes and derivatives. These are polycyclic compounds containing a phenanthrene moiety, which is a tricyclic aromatic compound with three non-linearly fused benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Not Available

Direct Parent

Phenanthrenes and derivatives

Alternative Parents

Substituents

Phenanthrene
Naphthalene
Phenol ether
Anisole
Alkyl aryl ether
Ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.56	ALOGPS
logP	3.16	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	46.15 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	91.27 m³·mol⁻¹	ChemAxon
Polarizability	35.43 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00015200

Chemspider ID

30904702

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85789494

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 2,3,4,6,7-Pentamethoxyphenanthrene (NP0061040)

MOL for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

3D MOL for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

3D SDF for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

3D-SDF for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

PDB for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

3D PDB for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

SMILES for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

INCHI for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

Structure for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)

3D Structure for NP0061040 (2,3,4,6,7-Pentamethoxyphenanthrene)