NP-MRD: Showing NP-Card for 1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one (NP0060641)

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Record Information

Version

2.0

Created at

2022-04-28 05:39:35 UTC

Updated at

2022-04-28 05:39:35 UTC

NP-MRD ID

NP0060641

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one

Description

Galiposin belongs to the class of organic compounds known as retrochalcones. These are a form of normal chalcones that are structurally distinguished by the lack of oxygen functionalities at the C2'- and C6'-positions. Thus, galiposin is considered to be a flavonoid. 1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one is found in Galipea granulosa. 1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one was first documented in 1998 (PMID: 17253223). Based on a literature review very few articles have been published on Galiposin.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 38  0  0  0  0  0  0  0  0999 V2000
    1.3401    2.1171    0.5886 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3297    0.8895    0.2253 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0321    0.2836    0.0156 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0648    0.9806    0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0032    2.3349    0.5981 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4070    0.4253    0.0004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6295   -0.8783   -0.3905 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9146   -1.3645   -0.5644 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0359   -0.5523   -0.3504 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8277    0.7376    0.0361 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5297    1.2181    0.2086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0780    1.3432    0.1859 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0287    0.2737    0.2504 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3954   -0.7818   -0.4501 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5867    0.1742    0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6282   -1.1347   -0.3430 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8382   -1.8199   -0.5173 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9916   -1.1123   -0.2809 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9989    0.2101    0.1104 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7779    0.8405    0.2682 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3226    0.6534    0.2726 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1137   -0.5363    0.3250 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3245   -1.5063   -0.3662 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0292   -0.7354   -0.2872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4724    2.9940   -0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8097   -1.5560   -0.5717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0972   -2.3971   -0.8741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4043    2.2594    0.5195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2203   -0.0064    1.3250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9666    0.5283   -0.2468 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7077   -1.6623   -0.5206 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8026   -2.8521   -0.8234 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7909    1.8906    0.5792 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2745   -0.8239    1.3815 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0545   -0.4347   -0.2376 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  2 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 23  1  0
 23 22  1  0
 22 21  1  0
 21 19  1  0
 19 20  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 14  1  0
 14 13  1  0
 13 12  1  0
 12 10  1  0
 10 11  2  0
 20 15  1  0
 11  6  1  0
 19 18  1  0
 10  9  1  0
  5 25  1  0
  3 24  1  0
 16 31  1  0
 17 32  1  0
 22 34  1  0
 22 35  1  0
 20 33  1  0
  7 26  1  0
  8 27  1  0
 13 29  1  0
 13 30  1  0
 11 28  1  0
M  END


  Mrv1652304282207392D          

 23 26  0  0  0  0            999 V2000
    7.6391    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9246    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6391    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4237    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9087    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4237    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4957    3.1729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    3.1729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  1  9  1  0  0  0  0
  4 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 17 22  1  0  0  0  0
 13 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0060641

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O\C(=C/C(=O)C1=CC=C2OCOC2=C1)C1=CC=C2OCOC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C17H12O6/c18-12(10-1-3-14-16(5-10)22-8-20-14)7-13(19)11-2-4-15-17(6-11)23-9-21-15/h1-7,18H,8-9H2/b12-7-

> <INCHI_KEY>
AFLGTFMAMFQGGU-GHXNOFRVSA-N

> <FORMULA>
C17H12O6

> <MOLECULAR_WEIGHT>
312.277

> <EXACT_MASS>
312.063388106

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
31.253751987191652

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z)-1,3-bis(2H-1,3-benzodioxol-5-yl)-3-hydroxyprop-2-en-1-one

> <ALOGPS_LOGP>
1.67

> <JCHEM_LOGP>
2.383245345333333

> <ALOGPS_LOGS>
-3.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
19.793560311175497

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.62786041940508

> <JCHEM_PKA_STRONGEST_BASIC>
-4.447853811467061

> <JCHEM_POLAR_SURFACE_AREA>
74.22000000000001

> <JCHEM_REFRACTIVITY>
80.30310000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.17e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
galiposin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      14.260   2.073   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.926   1.303   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.592   2.073   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.592   3.613   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.926   4.383   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.260   3.613   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      15.724   4.089   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      16.629   2.843   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      15.724   1.597   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      10.259   4.383   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.259   5.923   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       7.591   5.923   0.000  0.00  0.00           O+0
CONECT    1    2    6    9                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    1                                                       
CONECT   10    4   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   23                                                  
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18   14                                                       
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17                                                       
CONECT   23   13                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₂O₆

Average Mass

312.2770 Da

Monoisotopic Mass

312.06339 Da

IUPAC Name

(2Z)-1,3-bis(2H-1,3-benzodioxol-5-yl)-3-hydroxyprop-2-en-1-one

Traditional Name

galiposin

CAS Registry Number

Not Available

SMILES

O\C(=C/C(=O)C1=CC=C2OCOC2=C1)C1=CC=C2OCOC2=C1

InChI Identifier

InChI=1S/C17H12O6/c18-12(10-1-3-14-16(5-10)22-8-20-14)7-13(19)11-2-4-15-17(6-11)23-9-21-15/h1-7,18H,8-9H2/b12-7-

InChI Key

AFLGTFMAMFQGGU-GHXNOFRVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Galipea granulosa	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as retrochalcones. These are a form of normal chalcones that are structurally distinguished by the lack of oxygen functionalities at the C2'- and C6'-positions.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Linear 1,3-diarylpropanoids

Sub Class

Chalcones and dihydrochalcones

Direct Parent

Retrochalcones

Alternative Parents

Substituents

Retrochalcone
Cinnamic acid or derivatives
Benzodioxole
Styrene
Aryl ketone
Benzenoid
Vinylogous acid
Alpha,beta-unsaturated ketone
Acryloyl-group
Enone
Ketone
Acetal
Enol
Organoheterocyclic compound
Oxacycle
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Aldehyde
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Chalcones and dihydrochalcones (LMPK12120402 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.67	ALOGPS
logP	2.38	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	5.63	ChemAxon
pKa (Strongest Basic)	-4.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	74.22 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	80.3 m³·mol⁻¹	ChemAxon
Polarizability	31.25 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00014437

Chemspider ID

24846044

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

42607653

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lopez JA, Barillas W, Gomez-Laurito J, Martin GE, Lin FT, Al-Rehaily AJ, Zemaitis MA, Schiff PL Jr: Galiposin: a new beta-hydroxychalcone from Galipea granulosa. Planta Med. 1998 Feb;64(1):76-7. doi: 10.1055/s-2006-957373. [PubMed:17253223 ]

Showing NP-Card for 1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one (NP0060641)

MOL for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

3D MOL for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

3D SDF for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

3D-SDF for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

PDB for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

3D PDB for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

SMILES for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

INCHI for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

Structure for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)

3D Structure for NP0060641 (1,3-Bis(1,3-benzodioxol-5-yl)-3-hydroxy-2-propen-1-one)