NP-MRD: Showing NP-Card for (1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol (NP0059940)

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Record Information

Version

2.0

Created at

2022-04-28 05:04:40 UTC

Updated at

2022-04-28 05:04:40 UTC

NP-MRD ID

NP0059940

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol

Description

(1S,1aS,1bS,5R,5aR,6aR)-5a-methyl-2-methylidene-1-(propan-2-yl)-decahydrocyclopropa[a]inden-5-ol belongs to the class of organic compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. These are sesquiterpenoids with a structure based on the eudesmane skeleton. (1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol is found in Acorus calamus, Acorus calanus L. and Torilis japonica . Based on a literature review very few articles have been published on (1S,1aS,1bS,5R,5aR,6aR)-5a-methyl-2-methylidene-1-(propan-2-yl)-decahydrocyclopropa[a]inden-5-ol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304282207042D          

 16 18  0  0  1  0            999 V2000
    4.0548    2.5551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8586    1.7538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0665    1.5231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8702    0.7218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4706    2.0937    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6669    2.8951    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4590    3.1258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6552    3.9271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9654    3.3293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3357    2.7964    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6479    2.0328    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8305    2.1442    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0668    1.8319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0446    1.0145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5854    2.3371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7783    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  6  0  0  0
  6  9  1  0  0  0  0
 10  9  1  1  0  0  0
 11 10  1  1  0  0  0
  5 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
  6 16  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0059940

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@H]1[C@H]2C[C@]3(C)[C@@H]([C@H]12)C(=C)CC[C@H]3O

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O/c1-8(2)12-10-7-15(4)11(16)6-5-9(3)14(15)13(10)12/h8,10-14,16H,3,5-7H2,1-2,4H3/t10-,11-,12+,13+,14-,15+/m1/s1

> <INCHI_KEY>
WVVFQZGQVPKOMT-YRKSKIDTSA-N

> <FORMULA>
C15H24O

> <MOLECULAR_WEIGHT>
220.356

> <EXACT_MASS>
220.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
26.66232225103164

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,1aS,1bS,5R,5aR,6aR)-5a-methyl-2-methylidene-1-(propan-2-yl)-decahydrocyclopropa[a]inden-5-ol

> <ALOGPS_LOGP>
2.33

> <JCHEM_LOGP>
2.9152527660000014

> <ALOGPS_LOGS>
-3.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.714605703876625

> <JCHEM_PKA_STRONGEST_BASIC>
-0.736631465124363

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
66.2109

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.15e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,1aS,1bS,5R,5aR,6aR)-1-isopropyl-5a-methyl-2-methylidene-octahydrocyclopropa[a]inden-5-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       7.569   4.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.203   3.274   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.724   2.843   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.358   1.347   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.612   3.908   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.978   5.404   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.457   5.835   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.823   7.331   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       3.669   6.215   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.493   5.220   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.076   3.794   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.550   4.002   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.125   3.420   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.083   1.894   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.093   4.363   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.186   6.930   0.000  0.00  0.00           C+0
CONECT    1    2    7                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   11                                                  
CONECT    6    5    7    9   16                                             
CONECT    7    6    1    8                                                  
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10    5   12                                                  
CONECT   12   11   10   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    6                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O

Average Mass

220.3560 Da

Monoisotopic Mass

220.18272 Da

IUPAC Name

(1S,1aS,1bS,5R,5aR,6aR)-5a-methyl-2-methylidene-1-(propan-2-yl)-decahydrocyclopropa[a]inden-5-ol

Traditional Name

(1S,1aS,1bS,5R,5aR,6aR)-1-isopropyl-5a-methyl-2-methylidene-octahydrocyclopropa[a]inden-5-ol

CAS Registry Number

Not Available

SMILES

CC(C)[C@H]1[C@H]2C[C@]3(C)[C@@H]([C@H]12)C(=C)CC[C@H]3O

InChI Identifier

InChI=1S/C15H24O/c1-8(2)12-10-7-15(4)11(16)6-5-9(3)14(15)13(10)12/h8,10-14,16H,3,5-7H2,1-2,4H3/t10-,11-,12+,13+,14-,15+/m1/s1

InChI Key

WVVFQZGQVPKOMT-YRKSKIDTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Acorus calamus	LOTUS Database	35616633
Acorus calanus L.	Plant	KNApSAcK
Torilis japonica	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. These are sesquiterpenoids with a structure based on the eudesmane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids

Alternative Parents

Substituents

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoid
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.33	ALOGPS
logP	2.92	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	19.71	ChemAxon
pKa (Strongest Basic)	-0.74	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	66.21 m³·mol⁻¹	ChemAxon
Polarizability	26.66 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

161620291

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol (NP0059940)

MOL for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

3D MOL for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

3D SDF for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

3D-SDF for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

PDB for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

3D PDB for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

SMILES for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

INCHI for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

Structure for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)

3D Structure for NP0059940 ((1R,1aR,1bS,5R,5aR,6aR)-Decahydro-5a-methyl-2-methylene-1-(1-methylethyl)cycloprop[a]inden-5-ol)