NP-MRD: Showing NP-Card for Zygosporin F (NP0059740)

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Record Information

Version

2.0

Created at

2022-04-28 04:56:46 UTC

Updated at

2022-04-28 04:56:46 UTC

NP-MRD ID

NP0059740

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Zygosporin F

Description

(3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-1,12-dihydroxy-4,10,12-trimethyl-5-methylidene-11-oxo-3H,4H,5H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate belongs to the class of organic compounds known as isoindoles. These are heteropolycyclic compounds with a structure containing isoindole, a benzo-fused pyrrole. Zygosporin F is found in Zygosporium masonii. Based on a literature review very few articles have been published on (3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-1,12-dihydroxy-4,10,12-trimethyl-5-methylidene-11-oxo-3H,4H,5H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282206562D          

 40 43  0  0  1  0            999 V2000
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 14 40  1  1  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652304282206562D          

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    3.5824   -2.5704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7835   -2.3644    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4613   -3.2174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6396   -4.1157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4208   -4.3812    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0192   -4.6594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1118   -4.1708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7130   -4.3678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9869   -2.1845    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1488   -0.2748    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7988    0.5610    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9805    0.6656    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2985    1.2175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3463   -3.1947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  3  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 10  1  6  0  0  0
 13 12  1  1  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 12 28  1  0  0  0  0
 28 29  1  6  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 25 33  1  6  0  0  0
 25 34  1  1  0  0  0
 22 35  1  1  0  0  0
 17 36  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
 14 40  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0059740

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)NC(=O)[C@@]22[C@@H](\C=C\C[C@H](C)C(=O)[C@](C)(O)\C=C\[C@@H]2OC(C)=O)[C@H](OC(C)=O)C1=C

> <INCHI_IDENTIFIER>
InChI=1S/C32H39NO7/c1-18-11-10-14-24-28(40-22(5)35)20(3)19(2)27-25(17-23-12-8-7-9-13-23)33-30(37)32(24,27)26(39-21(4)34)15-16-31(6,38)29(18)36/h7-10,12-16,18-19,24-28,38H,3,11,17H2,1-2,4-6H3,(H,33,37)/b14-10+,16-15+/t18-,19+,24-,25-,26-,27-,28+,31+,32+/m0/s1

> <INCHI_KEY>
APXVRVLJIANRPI-XUWKKVPCSA-N

> <FORMULA>
C32H39NO7

> <MOLECULAR_WEIGHT>
549.664

> <EXACT_MASS>
549.2726526

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
58.709840497737346

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-12-hydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-1H,2H,3H,4H,5H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate

> <ALOGPS_LOGP>
3.20

> <JCHEM_LOGP>
3.5563656999999993

> <ALOGPS_LOGS>
-5.41

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.252900117905643

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.862606188504518

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3741439870299771

> <JCHEM_POLAR_SURFACE_AREA>
119.0

> <JCHEM_REFRACTIVITY>
150.67430000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.12e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-12-hydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2H,3H,4H,6H,6aH,9H,10H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.272  -6.873   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.169  -6.331   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.359  -7.309   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.107  -8.828   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.666  -9.370   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.524  -8.392   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.670  -6.817   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.791  -5.058   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       2.585  -4.100   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       3.123  -2.658   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.170  -1.374   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.661  -2.724   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.853  -3.832   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.344  -4.217   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.312  -2.930   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.607  -4.447   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.856  -2.230   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.740  -1.624   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.389  -1.974   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.754  -1.262   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.853  -2.340   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.167  -3.719   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.548  -5.361   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      11.084  -5.954   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       8.469  -6.460   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.541  -5.743   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.687  -4.798   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.196  -4.414   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       4.594  -6.006   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       4.927  -7.683   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       6.385  -8.178   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       3.769  -8.698   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       9.542  -7.785   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       8.798  -8.153   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.442  -4.078   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       7.745  -0.513   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       7.091   1.047   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       5.564   1.242   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       8.024   2.273   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.246  -5.964   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    7                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    3    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   18   28                                             
CONECT   13   12    8   14                                                  
CONECT   14   13   15   40                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   36                                                  
CONECT   18   17   12   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   35                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   33   34                                             
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   12   29                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33   25                                                            
CONECT   34   25                                                            
CONECT   35   22                                                            
CONECT   36   17   37                                                       
CONECT   37   36   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37                                                            
CONECT   40   14                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   86    0
END

View in JSmol

Synonyms

Value	Source
(3S,4S,6S,6AR,10S,12R,15S,15ar,15BR)-15-(acetyloxy)-3-benzyl-1,12-dihydroxy-4,10,12-trimethyl-5-methylidene-11-oxo-3H,4H,5H,6H,6ah,9H,10H,11H,12H,15H,15BH-cycloundeca[e]isoindol-6-yl acetic acid	Generator

Chemical Formula

C₃₂H₃₉NO₇

Average Mass

549.6640 Da

Monoisotopic Mass

549.27265 Da

IUPAC Name

(3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-12-hydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-1H,2H,3H,4H,5H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate

Traditional Name

(3S,4S,6S,6aR,10S,12R,15S,15aR,15bR)-15-(acetyloxy)-3-benzyl-12-hydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2H,3H,4H,6H,6aH,9H,10H,15H,15bH-cycloundeca[e]isoindol-6-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)NC(=O)[C@@]22[C@@H](\C=C\C[C@H](C)C(=O)[C@](C)(O)\C=C\[C@@H]2OC(C)=O)[C@H](OC(C)=O)C1=C

InChI Identifier

InChI=1S/C32H39NO7/c1-18-11-10-14-24-28(40-22(5)35)20(3)19(2)27-25(17-23-12-8-7-9-13-23)33-30(37)32(24,27)26(39-21(4)34)15-16-31(6,38)29(18)36/h7-10,12-16,18-19,24-28,38H,3,11,17H2,1-2,4-6H3,(H,33,37)/b14-10+,16-15+/t18-,19+,24-,25-,26-,27-,28+,31+,32+/m0/s1

InChI Key

APXVRVLJIANRPI-XUWKKVPCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Zygosporium masonii	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindoles. These are heteropolycyclic compounds with a structure containing isoindole, a benzo-fused pyrrole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindoles

Direct Parent

Isoindoles

Alternative Parents

Substituents

Isoindole
Acyloin
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Pyrroline
Tertiary alcohol
Cyclic carboximidic acid
Cyclic ketone
Carboxylic acid ester
Ketone
Propargyl-type 1,3-dipolar organic compound
Azacycle
Organic 1,3-dipolar compound
Carboxylic acid derivative
Hydrocarbon derivative
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organooxygen compound
Organic nitrogen compound
Carbonyl group
Organic oxygen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.2	ALOGPS
logP	3.56	ChemAxon
logS	-5.4	ALOGPS
pKa (Strongest Acidic)	12.86	ChemAxon
pKa (Strongest Basic)	-0.37	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	119 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	150.67 m³·mol⁻¹	ChemAxon
Polarizability	58.71 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163029148

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Zygosporin F (NP0059740)

MOL for NP0059740 (Zygosporin F)

3D MOL for NP0059740 (Zygosporin F)

3D SDF for NP0059740 (Zygosporin F)

3D-SDF for NP0059740 (Zygosporin F)

PDB for NP0059740 (Zygosporin F)

3D PDB for NP0059740 (Zygosporin F)

SMILES for NP0059740 (Zygosporin F)

INCHI for NP0059740 (Zygosporin F)

Structure for NP0059740 (Zygosporin F)

3D Structure for NP0059740 (Zygosporin F)