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Record Information
Version2.0
Created at2022-04-28 04:45:23 UTC
Updated at2022-04-28 04:45:23 UTC
NP-MRD IDNP0059534
Secondary Accession NumbersNone
Natural Product Identification
Common Name[3S-(3alpha,3aalpha,5abeta,9bbeta)]-3a,5,5a,7,8,9b-Hexahydro-3,5a,9-trimethylnaphtho[1,2-b]furan-2,6(3H,4H)-dione
DescriptionGracilin belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton. [3S-(3alpha,3aalpha,5abeta,9bbeta)]-3a,5,5a,7,8,9b-Hexahydro-3,5a,9-trimethylnaphtho[1,2-b]furan-2,6(3H,4H)-dione is found in Artemisia afra, Artemisia barrelieri, Artemisia fragrans, Artemisia gmelinii, Artemisia gracilescens, Artemisia granatensis , Artemisia hanseniana, Artemisia herba-alba, Artemisia maritima, Artemisia santolinifolia, Artemisia taurica, Artemisia tenuisecta, Artemisia vestita , Delphinium gracile and Dioscorea communis. [3S-(3alpha,3aalpha,5abeta,9bbeta)]-3a,5,5a,7,8,9b-Hexahydro-3,5a,9-trimethylnaphtho[1,2-b]furan-2,6(3H,4H)-dione was first documented in 2002 (PMID: 12227201). Based on a literature review a significant number of articles have been published on Gracilin (PMID: 19601607) (PMID: 31729596) (PMID: 27822214) (PMID: 26356268) (PMID: 18788476) (PMID: 31387354).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC15H20O3
Average Mass248.3220 Da
Monoisotopic Mass248.14124 Da
IUPAC Name(3S,3aS,5aR,9bS)-3,5a,9-trimethyl-2H,3H,3aH,4H,5H,5aH,6H,7H,8H,9bH-naphtho[1,2-b]furan-2,6-dione
Traditional Name(3S,3aS,5aR,9bS)-3,5a,9-trimethyl-3H,3aH,4H,5H,7H,8H,9bH-naphtho[1,2-b]furan-2,6-dione
CAS Registry NumberNot Available
SMILES
C[C@H]1[C@@H]2CC[C@@]3(C)C(=O)CCC(C)=C3[C@H]2OC1=O
InChI Identifier
InChI=1S/C15H20O3/c1-8-4-5-11(16)15(3)7-6-10-9(2)14(17)18-13(10)12(8)15/h9-10,13H,4-7H2,1-3H3/t9-,10-,13-,15-/m0/s1
InChI KeyRSDQBPGKMDFRHH-MJVIGCOGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Artemisia afraLOTUS Database
Artemisia barrelieriLOTUS Database
Artemisia fragransPlant
Artemisia gmeliniiLOTUS Database
Artemisia gracilescensLOTUS Database
Artemisia granatensisPlant
Artemisia hansenianaPlant
Artemisia herba-albaLOTUS Database
Artemisia maritimaLOTUS Database
Artemisia santolinifoliaLOTUS Database
Artemisia tauricaPlant
Artemisia tenuisectaLOTUS Database
Artemisia vestitaPlant
Delphinium gracileLOTUS Database
Dioscorea communisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene lactones
Direct ParentEudesmanolides, secoeudesmanolides, and derivatives
Alternative Parents
Substituents
  • Eudesmanolide
  • Sesquiterpenoid
  • Naphthofuran
  • Cyclohexenone
  • Gamma butyrolactone
  • Tetrahydrofuran
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Organic oxygen compound
  • Carbonyl group
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.56ALOGPS
logP2.6ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)19.78ChemAxon
pKa (Strongest Basic)-7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area43.37 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity67.74 m³·mol⁻¹ChemAxon
Polarizability27.26 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00013081
Chemspider ID183539
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound211707
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Rateb ME, Houssen WE, Schumacher M, Harrison WT, Diederich M, Ebel R, Jaspars M: Bioactive diterpene derivatives from the marine sponge Spongionella sp. J Nat Prod. 2009 Aug;72(8):1471-6. doi: 10.1021/np900233c. [PubMed:19601607 ]
  2. Gegunde S, Alfonso A, Alonso E, Alvarino R, Botana LM: Gracilin-Derivatives as Lead Compounds for Anti-inflammatory Effects. Cell Mol Neurobiol. 2020 May;40(4):603-615. doi: 10.1007/s10571-019-00758-5. Epub 2019 Nov 15. [PubMed:31729596 ]
  3. Sanchez JA, Alfonso A, Rodriguez I, Alonso E, Cifuentes JM, Bermudez R, Rateb ME, Jaspars M, Houssen WE, Ebel R, Tabudravu J, Botana LM: Spongionella Secondary Metabolites, Promising Modulators of Immune Response through CD147 Receptor Modulation. Front Immunol. 2016 Oct 24;7:452. doi: 10.3389/fimmu.2016.00452. eCollection 2016. [PubMed:27822214 ]
  4. Sanchez JA, Alfonso A, Leiros M, Alonso E, Rateb ME, Jaspars M, Houssen WE, Ebel R, Botana LM: Spongionella Secondary Metabolites Regulate Store Operated Calcium Entry Modulating Mitochondrial Functioning in SH-SY5Y Neuroblastoma Cells. Cell Physiol Biochem. 2015;37(2):779-92. doi: 10.1159/000430395. Epub 2015 Sep 11. [PubMed:26356268 ]
  5. Nirmal N, Praba GO, Velmurugan D: Modeling studies on phospholipase A2-inhibitor complexes. Indian J Biochem Biophys. 2008 Aug;45(4):256-62. [PubMed:18788476 ]
  6. Alvarino R, Alonso E, Abbasov ME, Chaheine CM, Conner ML, Romo D, Alfonso A, Botana LM: Gracilin A Derivatives Target Early Events in Alzheimer's Disease: in Vitro Effects on Neuroinflammation and Oxidative Stress. ACS Chem Neurosci. 2019 Sep 18;10(9):4102-4111. doi: 10.1021/acschemneuro.9b00329. Epub 2019 Aug 23. [PubMed:31387354 ]
  7. Abbasov ME, Alvarino R, Chaheine CM, Alonso E, Sanchez JA, Conner ML, Alfonso A, Jaspars M, Botana LM, Romo D: Simplified immunosuppressive and neuroprotective agents based on gracilin A. Nat Chem. 2019 Apr;11(4):342-350. doi: 10.1038/s41557-019-0230-0. Epub 2019 Mar 22. [PubMed:30903037 ]
  8. Sanchez JA, Alfonso A, Leiros M, Alonso E, Rateb ME, Jaspars M, Houssen WE, Ebel R, Tabudravu J, Botana LM: Identification of Spongionella compounds as cyclosporine A mimics. Pharmacol Res. 2016 May;107:407-414. doi: 10.1016/j.phrs.2016.03.029. Epub 2016 Apr 1. [PubMed:27041481 ]
  9. Leiros M, Alonso E, Rateb ME, Houssen WE, Ebel R, Jaspars M, Alfonso A, Botana LM: Gracilins: Spongionella-derived promising compounds for Alzheimer disease. Neuropharmacology. 2015 Jun;93:285-93. doi: 10.1016/j.neuropharm.2015.02.015. Epub 2015 Feb 24. [PubMed:25724081 ]
  10. Liu HW, Hu K, Zhao QC, Cui CB, Kobayashi H, Yao XS: Bioactive saponins from Dioscorea futschauensis. Pharmazie. 2002 Aug;57(8):570-2. [PubMed:12227201 ]