NP-MRD: Showing NP-Card for 11,13-Dihydrosantamarine (NP0059494)

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Record Information

Version

2.0

Created at

2022-04-28 04:43:30 UTC

Updated at

2022-04-28 04:43:31 UTC

NP-MRD ID

NP0059494

Secondary Accession Numbers

None

Natural Product Identification

Common Name

11,13-Dihydrosantamarine

Description

11-Beta-H,13-dihydrosantamarine, also known as gallicadiol, belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton. 11,13-Dihydrosantamarine is found in Artemisia barrelieri, Artemisia cana, Artemisia canariensis, Artemisia maritima, Artemisia tridentata, Ixeris sonchifolia Hance, Lactuca indica, Lactuca lacianata, Lactuca laciniata, Lactuca laciniata Roth, Lactuca sativa, Magnolia kachirachirai and Notoseris triflora (Hemsl.) C .Shih. Based on a literature review very few articles have been published on 11-beta-H,13-dihydrosantamarine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
   -1.5727    2.4350   -1.3012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5279    1.5110   -0.1709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5453    1.4739    0.7070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4061    0.5020    1.8207 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9256   -0.8435    1.4034 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9601   -1.7647    1.2478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0259   -0.8122    0.1722 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9786   -0.9663   -1.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0812   -1.9401    0.1459 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3317   -1.6583   -0.1781 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7710   -0.2621   -0.0029 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0173    0.1470   -0.6982 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1965   -0.1641    0.1960 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8053    1.6062   -0.8452 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6656    2.4811   -1.0401 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4468    1.8476   -0.7266 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7382    0.6221   -0.7331 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4419    0.5604    0.1419 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0399    3.3995   -0.9449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6109    2.6282   -1.7678 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2693    2.0641   -2.0919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4107    2.1302    0.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3936    0.3719    2.3219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7414    0.9812    2.5874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2683   -1.2330    2.2310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9124   -2.4919    1.8959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8895   -0.3820   -0.9014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4438   -0.7591   -1.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2827   -2.0481   -1.0142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1160   -2.4419    1.1592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4268   -2.7604   -0.5533 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0142   -2.3155    0.4385 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5724   -1.9634   -1.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8095    0.0813    1.0473 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1279   -0.3261   -1.6927 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0656    0.4660   -0.0280 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3910   -1.2486    0.1366 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8556    0.0360    1.2418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5718    0.2386   -1.7423 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1097    0.7978    1.1936 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  7  1  0
  7  8  1  6
  7  5  1  0
  5  6  1  0
  5  4  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 18  1  0
 18 17  1  0
 17 16  1  0
 16 14  1  0
 14 15  2  0
 14 12  1  0
 17 11  1  0
 18  7  1  0
 13 36  1  0
 13 37  1  0
 13 38  1  0
 12 35  1  6
 11 34  1  1
 10 32  1  0
 10 33  1  0
  9 30  1  0
  9 31  1  0
  8 27  1  0
  8 28  1  0
  8 29  1  0
  5 25  1  1
  6 26  1  0
  4 23  1  0
  4 24  1  0
  3 22  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
 18 40  1  1
 17 39  1  6
M  END


  Mrv1652304282206432D          

 18 20  0  0  1  0            999 V2000
    2.8124    2.2499    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9878    2.2242    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5978    1.4972    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0325    0.7959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8571    0.8217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2470    1.5487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6425    0.0689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7732    1.4714    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3386    2.1727    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7286    2.8997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5532    2.9254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4626    1.9760    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5232    1.1532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2244    0.7186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2406    0.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0926    2.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3778    2.9512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2024    2.9770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  8 15  1  1  0  0  0
 12 16  1  1  0  0  0
  2 17  1  6  0  0  0
  1 18  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0059494

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@@H]2CC[C@@]3(C)[C@H](O)CC=C(C)[C@@H]3[C@H]2OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O3/c1-8-4-5-11(16)15(3)7-6-10-9(2)14(17)18-13(10)12(8)15/h4,9-13,16H,5-7H2,1-3H3/t9-,10-,11+,12+,13-,15-/m0/s1

> <INCHI_KEY>
DGIMMEWTLSCNGO-DMLGPZFASA-N

> <FORMULA>
C15H22O3

> <MOLECULAR_WEIGHT>
250.338

> <EXACT_MASS>
250.156894568

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.10398642081994

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,3aS,5aR,6R,9aS,9bS)-6-hydroxy-3,5a,9-trimethyl-2H,3H,3aH,4H,5H,5aH,6H,7H,9aH,9bH-naphtho[1,2-b]furan-2-one

> <ALOGPS_LOGP>
2.35

> <JCHEM_LOGP>
2.0055296103333333

> <ALOGPS_LOGS>
-2.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.62584283178823

> <JCHEM_PKA_STRONGEST_BASIC>
-2.962456345375827

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
68.905

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.97e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,3aS,5aR,6R,9aS,9bS)-6-hydroxy-3,5a,9-trimethyl-3H,3aH,4H,5H,6H,7H,9aH,9bH-naphtho[1,2-b]furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       5.250   4.200   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.711   4.152   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.983   2.795   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.794   1.486   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.333   1.534   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.061   2.891   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.066   0.129   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.443   2.747   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.632   4.056   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.360   5.413   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.899   5.461   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.863   3.689   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.977   2.153   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.286   1.341   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       0.449   1.571   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -2.040   4.683   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.439   5.509   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.978   5.557   0.000  0.00  0.00           O+0
CONECT    1    2    6   18                                                  
CONECT    2    1    3   11   17                                             
CONECT    3    2    4    8                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    4                                                            
CONECT    8    3    9   15                                                  
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10    2                                                       
CONECT   12    9   13   16                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    8                                                       
CONECT   16   12                                                            
CONECT   17    2                                                            
CONECT   18    1                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

View in JSmol

Synonyms

Value	Source
11-b-H,13-Dihydrosantamarine	Generator
11-Β-H,13-dihydrosantamarine	Generator
Gallicadiol	MeSH
Isogallicadiol	MeSH

Chemical Formula

C₁₅H₂₂O₃

Average Mass

250.3380 Da

Monoisotopic Mass

250.15689 Da

IUPAC Name

(3S,3aS,5aR,6R,9aS,9bS)-6-hydroxy-3,5a,9-trimethyl-2H,3H,3aH,4H,5H,5aH,6H,7H,9aH,9bH-naphtho[1,2-b]furan-2-one

Traditional Name

(3S,3aS,5aR,6R,9aS,9bS)-6-hydroxy-3,5a,9-trimethyl-3H,3aH,4H,5H,6H,7H,9aH,9bH-naphtho[1,2-b]furan-2-one

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@@H]2CC[C@@]3(C)[C@H](O)CC=C(C)[C@@H]3[C@H]2OC1=O

InChI Identifier

InChI=1S/C15H22O3/c1-8-4-5-11(16)15(3)7-6-10-9(2)14(17)18-13(10)12(8)15/h4,9-13,16H,5-7H2,1-3H3/t9-,10-,11+,12+,13-,15-/m0/s1

InChI Key

DGIMMEWTLSCNGO-DMLGPZFASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Artemisia barrelieri	LOTUS Database	35616633
Artemisia cana	LOTUS Database	35616633
Artemisia canariensis	Plant	KNApSAcK
Artemisia maritima	LOTUS Database	35616633
Artemisia tridentata	Plant	KNApSAcK
Ixeris sonchifolia Hance	Plant	KNApSAcK
Lactuca indica	LOTUS Database	35616633
Lactuca lacianata	Plant	KNApSAcK
Lactuca laciniata	Plant	KNApSAcK
Lactuca laciniata Roth	Plant	KNApSAcK
Lactuca sativa	LOTUS Database	35616633
Magnolia kachirachirai	LOTUS Database	35616633
Notoseris triflora (Hemsl.) C .Shih	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmanolides, secoeudesmanolides, and derivatives. These are terpenoids with a structure based on the eudesmanolide (a 3,5a,9-trimethyl-naphtho[1,2-b]furan-2-one derivative) or secoeudesmanolide (a 3,6-dimethyl-5-(pentan-2-yl)-1-benzofuran-2-one derivative) skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Eudesmanolides, secoeudesmanolides, and derivatives

Alternative Parents

Substituents

Eudesmanolide
Sesquiterpenoid
Naphthofuran
Gamma butyrolactone
Tetrahydrofuran
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organoheterocyclic compound
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.35	ALOGPS
logP	2.01	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	14.63	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	68.9 m³·mol⁻¹	ChemAxon
Polarizability	28.1 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

423491

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

482787

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 11,13-Dihydrosantamarine (NP0059494)

MOL for NP0059494 (11,13-Dihydrosantamarine)

3D MOL for NP0059494 (11,13-Dihydrosantamarine)

3D SDF for NP0059494 (11,13-Dihydrosantamarine)

3D-SDF for NP0059494 (11,13-Dihydrosantamarine)

PDB for NP0059494 (11,13-Dihydrosantamarine)

3D PDB for NP0059494 (11,13-Dihydrosantamarine)

SMILES for NP0059494 (11,13-Dihydrosantamarine)

INCHI for NP0059494 (11,13-Dihydrosantamarine)

Structure for NP0059494 (11,13-Dihydrosantamarine)

3D Structure for NP0059494 (11,13-Dihydrosantamarine)