NP-MRD: Showing NP-Card for Carindone (NP0059192)

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Record Information

Version

2.0

Created at

2022-04-28 04:28:45 UTC

Updated at

2022-04-28 04:28:45 UTC

NP-MRD ID

NP0059192

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Carindone

Description

(2R,3'aS,6R,7'S,8aR,9'aS,9'bR)-6,7'-bis(2-hydroxypropan-2-yl)-4,5',8a,9'a-tetramethyl-3,3'a,4',5,6,6',7,7',8,8',8a,9',9'a,9'b-tetradecahydro-1H,3'H-spiro[naphthalene-2,2'-naphtho[1,2-b]furan]-3,3',4'-trione belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Carindone is found in Carissa carandas , Carissa laneolata R.Br. and Carissa spinarum. Based on a literature review very few articles have been published on (2R,3'aS,6R,7'S,8aR,9'aS,9'bR)-6,7'-bis(2-hydroxypropan-2-yl)-4,5',8a,9'a-tetramethyl-3,3'a,4',5,6,6',7,7',8,8',8a,9',9'a,9'b-tetradecahydro-1H,3'H-spiro[naphthalene-2,2'-naphtho[1,2-b]furan]-3,3',4'-trione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282206282D          

 37 41  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652304282206282D          

 37 41  0  0  1  0            999 V2000
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    0.6038   -0.4050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0489    0.0995    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0618    0.9171    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8251    1.2300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8122   -0.2134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5755   -0.5264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1252    0.5499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4992   -0.9768    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5884    1.5430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7387    2.5919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  2  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  1 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
  8 16  1  1  0  0  0
  7 17  1  6  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
  6 19  1  6  0  0  0
 19 20  2  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 18 25  1  0  0  0  0
 25 26  2  0  0  0  0
 24 27  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 22 31  1  0  0  0  0
 29 32  1  6  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 32 35  1  0  0  0  0
 22 36  1  1  0  0  0
  3 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0059192

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C2C[C@H](CC[C@]2(C)[C@@H]2O[C@]3(C[C@@]4(C)CC[C@H](CC4=C(C)C3=O)C(C)(C)O)C(=O)[C@@H]2C1=O)C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C31H44O6/c1-16-21-14-19(28(5,6)36)10-12-30(21,8)26-22(23(16)32)25(34)31(37-26)15-29(7)11-9-18(27(3,4)35)13-20(29)17(2)24(31)33/h18-19,22,26,35-36H,9-15H2,1-8H3/t18-,19+,22+,26-,29-,30+,31+/m1/s1

> <INCHI_KEY>
SKUVBRVOKSCXDJ-LYKVPTNKSA-N

> <FORMULA>
C31H44O6

> <MOLECULAR_WEIGHT>
512.687

> <EXACT_MASS>
512.313789137

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
81

> <JCHEM_AVERAGE_POLARIZABILITY>
56.96011338002737

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3'aS,6R,7'S,8aR,9'aS,9'bR)-6,7'-bis(2-hydroxypropan-2-yl)-4,5',8a,9'a-tetramethyl-3,3'a,4',5,6,6',7,7',8,8',8a,9',9'a,9'b-tetradecahydro-1H,3'H-spiro[naphthalene-2,2'-naphtho[1,2-b]furan]-3,3',4'-trione

> <ALOGPS_LOGP>
3.89

> <JCHEM_LOGP>
4.887409957333336

> <ALOGPS_LOGS>
-4.98

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.3470236774931

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.007922199700303

> <JCHEM_PKA_STRONGEST_BASIC>
-0.5962867124967707

> <JCHEM_POLAR_SURFACE_AREA>
100.9

> <JCHEM_REFRACTIVITY>
142.46340000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.43e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3'aS,6R,7'S,8aR,9'aS,9'bR)-6,7'-bis(2-hydroxypropan-2-yl)-4,5',8a,9'a-tetramethyl-3'a,5,6,6',7,7',8,8',9',9'b-decahydro-1H-spiro[naphthalene-2,2'-naphtho[1,2-b]furan]-3,3',4'-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.881   1.988   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.355   2.195   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.770   3.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.244   3.826   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       7.660   5.251   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       7.302   2.608   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.887   1.183   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.413   0.977   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.997  -0.448   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.523  -0.655   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.465   0.563   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.991   0.357   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.517   0.150   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.197   1.883   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      13.784  -1.169   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.471  -0.242   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.712   0.187   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       5.402   0.996   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.767   2.493   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.771   3.667   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.183   1.938   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.759   1.354   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.552  -0.172   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.770  -1.114   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.195  -0.530   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.414  -1.471   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       3.564  -2.640   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.127  -0.756   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.091   0.186   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.115   1.712   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.540   2.296   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.516  -0.398   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -2.941  -0.983   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.100   1.027   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -0.932  -1.823   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       2.965   2.880   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      10.712   4.838   0.000  0.00  0.00           C+0
CONECT    1    2   11                                                       
CONECT    2    1    3    8                                                  
CONECT    3    2    4   37                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   19                                                  
CONECT    7    6    8   17                                                  
CONECT    8    7    2    9   16                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    1   12                                                  
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16    8                                                            
CONECT   17    7   18                                                       
CONECT   18   17   19   21   25                                             
CONECT   19   18    6   20                                                  
CONECT   20   19                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23   31   36                                             
CONECT   23   22   24   28                                                  
CONECT   24   23   25   27                                                  
CONECT   25   24   18   26                                                  
CONECT   26   25                                                            
CONECT   27   24                                                            
CONECT   28   23   29                                                       
CONECT   29   28   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30   22                                                       
CONECT   32   29   33   34   35                                             
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   32                                                            
CONECT   36   22                                                            
CONECT   37    3                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₁H₄₄O₆

Average Mass

512.6870 Da

Monoisotopic Mass

512.31379 Da

IUPAC Name

Traditional Name

(2R,3'aS,6R,7'S,8aR,9'aS,9'bR)-6,7'-bis(2-hydroxypropan-2-yl)-4,5',8a,9'a-tetramethyl-3'a,5,6,6',7,7',8,8',9',9'b-decahydro-1H-spiro[naphthalene-2,2'-naphtho[1,2-b]furan]-3,3',4'-trione

CAS Registry Number

Not Available

SMILES

CC1=C2C[C@H](CC[C@]2(C)[C@@H]2O[C@]3(C[C@@]4(C)CC[C@H](CC4=C(C)C3=O)C(C)(C)O)C(=O)[C@@H]2C1=O)C(C)(C)O

InChI Identifier

InChI=1S/C31H44O6/c1-16-21-14-19(28(5,6)36)10-12-30(21,8)26-22(23(16)32)25(34)31(37-26)15-29(7)11-9-18(27(3,4)35)13-20(29)17(2)24(31)33/h18-19,22,26,35-36H,9-15H2,1-8H3/t18-,19+,22+,26-,29-,30+,31+/m1/s1

InChI Key

SKUVBRVOKSCXDJ-LYKVPTNKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Carissa carandas	Plant	KNApSAcK
Carissa laneolata R.Br.	Plant	KNApSAcK
Carissa spinarum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Naphthofuran
Cyclohexenone
1,3-diketone
1,3-dicarbonyl compound
3-furanone
Tetrahydrofuran
Tertiary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.89	ALOGPS
logP	4.89	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	12.01	ChemAxon
pKa (Strongest Basic)	-0.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	142.46 m³·mol⁻¹	ChemAxon
Polarizability	56.96 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

160863620

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Carindone (NP0059192)

MOL for NP0059192 (Carindone)

3D MOL for NP0059192 (Carindone)

3D SDF for NP0059192 (Carindone)

3D-SDF for NP0059192 (Carindone)

PDB for NP0059192 (Carindone)

3D PDB for NP0059192 (Carindone)

SMILES for NP0059192 (Carindone)

INCHI for NP0059192 (Carindone)

Structure for NP0059192 (Carindone)

3D Structure for NP0059192 (Carindone)