NP-MRD: Showing NP-Card for 12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one (NP0059157)

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Record Information

Version

2.0

Created at

2022-04-28 04:26:41 UTC

Updated at

2022-04-28 04:26:41 UTC

NP-MRD ID

NP0059157

Secondary Accession Numbers

None

Natural Product Identification

Common Name

12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one

Description

Trichothecolon belongs to the class of organic compounds known as trichothecenes. These are sesquiterpene mycotoxins structurally characterized by the presence of an epoxide ring and a benzopyran derivative with a variant number of hydroxyl, acetyl, or other substituents. The most important structural features causing the biological activities of trichothecenes are the 12,13-epoxy ring, the presence of hydroxyl or acetyl groups at appropriate positions on the trichothecene nucleus and the structure and position of the side-chain. 12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one is found in Fusarium roseum, Holarrhena floribunda and Trichothecium roseum. 12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one was first documented in 2009 (PMID: 19938595). Based on a literature review very few articles have been published on Trichothecolon.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 42  0  0  0  0  0  0  0  0999 V2000
    4.4355   -0.5127   -0.1409 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9303   -0.4026   -0.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1263   -1.2341   -0.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6670   -1.0628   -0.5848 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2398   -1.8645    0.4569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0576   -1.7069    0.8382 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9891   -1.6933   -0.3820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2176   -0.2668   -0.7439 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5002    0.0943   -0.2902 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1922    0.4707    0.0856 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5738    1.8952    0.3084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2184   -0.2945    1.3568 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2644    0.0672    2.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5387   -0.1508    2.0034 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1772    0.3315   -0.5592 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.8283   -1.9816 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1000    1.3013    0.1327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3150    0.6640    0.7008 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8258    1.0079    1.8131 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7930   -0.1217    0.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6808   -1.5668   -0.3017 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8138    0.1756   -0.9043 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5815   -2.0341   -1.2840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2536   -1.5652   -1.5160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3284   -2.4783    1.5531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5873   -2.3324   -1.1650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9322   -2.1760   -0.0274 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1219   -0.0528   -1.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0192    0.5425   -1.0214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6521    2.1838    1.3662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9422    2.5996   -0.2820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6119    2.0332   -0.1138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1172   -0.6691    3.4875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1747    1.1086    3.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1865   -0.0030   -2.6893 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0038    1.2454   -2.2845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7094    1.6524   -2.0729 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5613    1.8993    0.9050 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4318    2.0877   -0.6079 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  1
 10 12  1  0
 12 13  1  0
 13 14  1  0
 10 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
 18 19  2  0
 18  2  1  0
 15  4  1  0
 12  6  1  0
 12 14  1  6
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  6
  6 25  1  1
  7 26  1  0
  7 27  1  0
  8 28  1  6
  9 29  1  0
 11 30  1  0
 11 31  1  0
 11 32  1  0
 13 33  1  0
 13 34  1  0
 16 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
M  END


  Mrv1652304282206262D          

 19 22  0  0  1  0            999 V2000
    3.3584    0.4952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7212    1.0193    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8566    1.8331    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6290    2.1229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2661    1.5988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1308    0.7849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7680    0.2608    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0386    1.8885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3047    2.4463    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4811    2.3972    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5184    1.4425    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0006    0.6177    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0498   -0.2058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2373    0.9307    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0061    1.7227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6241    0.3788    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9482    0.8463    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7170    1.6383    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6471    0.1976    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  2  0  0  0  0
  5  8  1  0  0  0  0
  3  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  2 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 10 15  1  1  0  0  0
 14 16  1  6  0  0  0
 11 17  1  1  0  0  0
 17 18  1  0  0  0  0
 11 18  1  0  0  0  0
  2 19  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0059157

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C[C@H]2O[C@@H]3C[C@@H](O)[C@@](C)([C@]33CO3)[C@@]2(C)CC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-8-4-11-13(2,6-9(8)16)14(3)10(17)5-12(19-11)15(14)7-18-15/h4,10-12,17H,5-7H2,1-3H3/t10-,11-,12-,13+,14-,15+/m1/s1

> <INCHI_KEY>
BURHPZJXARNGQY-LACSLYJWSA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.321

> <EXACT_MASS>
264.136159124

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
27.26253067140762

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'S,2S,2'R,7'R,9'R,11'R)-11'-hydroxy-1',2',5'-trimethyl-8'-oxaspiro[oxirane-2,12'-tricyclo[7.2.1.0^{2,7}]dodecan]-5'-en-4'-one

> <ALOGPS_LOGP>
0.90

> <JCHEM_LOGP>
0.7985312609999994

> <ALOGPS_LOGS>
-1.80

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.26534859553935

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.502887776517248

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0161605073182445

> <JCHEM_POLAR_SURFACE_AREA>
59.06

> <JCHEM_REFRACTIVITY>
68.61810000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.17e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2S,2'R,7'R,9'R,11'R)-11'-hydroxy-1',2',5'-trimethyl-8'-oxaspiro[oxirane-2,12'-tricyclo[7.2.1.0^{2,7}]dodecan]-5'-en-4'-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.269   0.924   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.080   1.903   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.332   3.422   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.774   3.963   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.963   2.984   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.711   1.465   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       8.900   0.487   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       9.405   3.525   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       4.302   4.567   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.765   4.475   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.834   2.693   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.734   1.153   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.826  -0.384   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.310   1.737   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.878   3.216   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.165   0.707   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       1.770   1.580   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.338   3.058   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.941   0.369   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   12   19                                             
CONECT    3    2    4    9                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5                                                            
CONECT    9    3   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12   17   18                                             
CONECT   12   11    2   13   14                                             
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14   10                                                       
CONECT   16   14                                                            
CONECT   17   11   18                                                       
CONECT   18   17   11                                                       
CONECT   19    2                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3210 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

(1'S,2S,2'R,7'R,9'R,11'R)-11'-hydroxy-1',2',5'-trimethyl-8'-oxaspiro[oxirane-2,12'-tricyclo[7.2.1.0^{2,7}]dodecan]-5'-en-4'-one

Traditional Name

(1'S,2S,2'R,7'R,9'R,11'R)-11'-hydroxy-1',2',5'-trimethyl-8'-oxaspiro[oxirane-2,12'-tricyclo[7.2.1.0^{2,7}]dodecan]-5'-en-4'-one

CAS Registry Number

Not Available

SMILES

CC1=C[C@H]2O[C@@H]3C[C@@H](O)[C@@](C)([C@]33CO3)[C@@]2(C)CC1=O

InChI Identifier

InChI=1S/C15H20O4/c1-8-4-11-13(2,6-9(8)16)14(3)10(17)5-12(19-11)15(14)7-18-15/h4,10-12,17H,5-7H2,1-3H3/t10-,11-,12-,13+,14-,15+/m1/s1

InChI Key

BURHPZJXARNGQY-LACSLYJWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Fusarium sambucinum	Fungi	KNApSAcK
Holarrhena floribunda	LOTUS Database	35616633
Trichothecium roseum	Fungi	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as trichothecenes. These are sesquiterpene mycotoxins structurally characterized by the presence of an epoxide ring and a benzopyran derivative with a variant number of hydroxyl, acetyl, or other substituents. The most important structural features causing the biological activities of trichothecenes are the 12,13-epoxy ring, the presence of hydroxyl or acetyl groups at appropriate positions on the trichothecene nucleus and the structure and position of the side-chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Trichothecenes

Alternative Parents

Substituents

Trichothecene skeleton
Cyclohexenone
Oxepane
Oxane
Cyclic alcohol
Ketone
Secondary alcohol
Cyclic ketone
Dialkyl ether
Oxirane
Ether
Oxacycle
Organoheterocyclic compound
Carbonyl group
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.9	ALOGPS
logP	0.8	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	14.5	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	59.06 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	68.62 m³·mol⁻¹	ChemAxon
Polarizability	27.26 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012654

Chemspider ID

10222014

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12444504

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zaichenko AM, Nagornaia SS, Andrienko EV, Tsyganenko ES: [Study of specificity of fungistatic effect of trichothecene mycotoxins]. Mikrobiol Z. 2009 Mar-Apr;71(2):57-62. [PubMed:19938595 ]

Showing NP-Card for 12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one (NP0059157)

MOL for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

3D MOL for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

3D SDF for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

3D-SDF for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

PDB for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

3D PDB for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

SMILES for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

INCHI for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

Structure for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)

3D Structure for NP0059157 (12,13-Epoxy-4b-hydroxytrichothec-9-en-8-one)