NP-MRD: Showing NP-Card for (1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol (NP0059092)

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Record Information

Version

2.0

Created at

2022-04-28 04:22:03 UTC

Updated at

2022-04-28 04:22:03 UTC

NP-MRD ID

NP0059092

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol

Description

7-Hydroxylaurene belongs to the class of organic compounds known as meta cresols. These are aromatic compounds containing a meta-cresol moiety, which consists of a benzene ring bearing a methyl group and a hydroxyl group at ring positions 1 and 3, respectively. (1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol is found in Aplysia punctata, Laurencia dendroidea and Laurencia subopposita. (1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol was first documented in 2012 (PMID: 23242203). Based on a literature review a small amount of articles have been published on 7-Hydroxylaurene (PMID: 34302322) (PMID: 22233863).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 37  0  0  0  0  0  0  0  0999 V2000
   -3.8958    0.0754    1.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9041    0.0948    0.4522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8843   -0.5475   -0.8789 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4099   -0.8672   -1.1746 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7113   -0.3670    0.0382 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0537   -1.5052    1.0735 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7140   -0.2696    0.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5218   -0.8972    0.9878 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8967   -0.7880    1.0279 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5414   -0.0198    0.0894 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0172    0.1481    0.0656 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7999    0.6255   -0.8731 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4195    0.4957   -0.8873 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6429    1.1290   -1.8468 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5407    0.7564    0.5655 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5774    2.0216   -0.2001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8053   -0.4524    1.0613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8762    0.5576    2.2815 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4970   -1.4672   -0.9249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2926    0.1835   -1.6026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1792   -0.4053   -2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3258   -1.9661   -1.2704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1079   -1.8194    0.9228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4371   -2.3797    0.8279 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8361   -1.1584    2.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0821   -1.5310    1.7791 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4834   -1.2904    1.7777 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4350   -0.1035    1.0756 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5063   -0.5200   -0.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2140    1.2233   -0.1748 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2366    1.2476   -1.6445 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1183    1.7008   -2.5475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3461    0.9603    1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8496    1.8981   -1.2491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6443    2.6114   -0.0186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4547    2.6258    0.2257 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  1
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
  5 15  1  0
 13  7  1  0
 16 34  1  0
 16 35  1  0
 16 36  1  0
 15 33  1  1
  1 17  1  0
  1 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  6 23  1  0
  6 24  1  0
  6 25  1  0
  8 26  1  0
  9 27  1  0
 11 28  1  0
 11 29  1  0
 11 30  1  0
 12 31  1  0
 14 32  1  0
M  END


  Mrv1652304282206222D          

 16 17  0  0  1  0            999 V2000
    0.9188    2.8480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1738    3.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9807    3.8042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5328    3.1911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2778    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4709    2.2349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8299    1.7934    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4973    1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2424    0.5238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4174    0.5238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9324   -0.1436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1624    1.3085    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3778    1.5634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3819    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3397    3.3626    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6217    4.2458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  7  5  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  6  0  0  0
  7 14  1  1  0  0  0
  4 15  1  0  0  0  0
  2 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0059092

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1C(=C)CC[C@@]1(C)C1=CC=C(C)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O/c1-10-5-6-13(14(16)9-10)15(4)8-7-11(2)12(15)3/h5-6,9,12,16H,2,7-8H2,1,3-4H3/t12-,15+/m0/s1

> <INCHI_KEY>
TWNGKYVFHDFBJI-SWLSCSKDSA-N

> <FORMULA>
C15H20O

> <MOLECULAR_WEIGHT>
216.324

> <EXACT_MASS>
216.151415264

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.92968363660129

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1R,2S)-1,2-dimethyl-3-methylidenecyclopentyl]-5-methylphenol

> <ALOGPS_LOGP>
4.77

> <JCHEM_LOGP>
4.379961963333335

> <ALOGPS_LOGS>
-4.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.667492050403554

> <JCHEM_PKA_STRONGEST_BASIC>
-5.0472624744166525

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
68.0205

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.33e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1R,2S)-1,2-dimethyl-3-methylidenecyclopentyl]-5-methylphenol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       1.715   5.316   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.191   6.781   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.697   7.101   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.728   5.957   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.252   4.492   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.746   4.172   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.282   3.348   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.528   2.442   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.052   0.978   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.512   0.978   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.607  -0.268   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.037   2.442   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.572   2.918   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.313   4.492   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.234   6.277   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.161   7.925   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   15                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   12   14                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    7   13                                                  
CONECT   13   12                                                            
CONECT   14    7                                                            
CONECT   15    4                                                            
CONECT   16    2                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O

Average Mass

216.3240 Da

Monoisotopic Mass

216.15142 Da

IUPAC Name

2-[(1R,2S)-1,2-dimethyl-3-methylidenecyclopentyl]-5-methylphenol

Traditional Name

2-[(1R,2S)-1,2-dimethyl-3-methylidenecyclopentyl]-5-methylphenol

CAS Registry Number

Not Available

SMILES

C[C@H]1C(=C)CC[C@@]1(C)C1=CC=C(C)C=C1O

InChI Identifier

InChI=1S/C15H20O/c1-10-5-6-13(14(16)9-10)15(4)8-7-11(2)12(15)3/h5-6,9,12,16H,2,7-8H2,1,3-4H3/t12-,15+/m0/s1

InChI Key

TWNGKYVFHDFBJI-SWLSCSKDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aplysia punctata	LOTUS Database	35616633
Laurencia dendroidea	LOTUS Database	35616633
Laurencia subopposita	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as meta cresols. These are aromatic compounds containing a meta-cresol moiety, which consists of a benzene ring bearing a methyl group and a hydroxyl group at ring positions 1 and 3, respectively.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

M-cresol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Toluene
Monocyclic benzene moiety
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.77	ALOGPS
logP	4.38	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	10.67	ChemAxon
pKa (Strongest Basic)	-5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	68.02 m³·mol⁻¹	ChemAxon
Polarizability	25.93 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012577

Chemspider ID

9271170

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11096028

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sato K, Kaneko K, Kamekawa T, Taba K, Ishigami S, Wada M, Ishii T, Abe T, Kamada T, Suzuki M: Two New Halogenated Compounds from the Marine Red Alga Laurencia nipponica Yamada from the Kunashiri and Etorofu Islands. Chem Biodivers. 2021 Sep;18(9):e2100397. doi: 10.1002/cbdv.202100397. Epub 2021 Aug 4. [PubMed:34302322 ]
Liang Y, Li XM, Cui CM, Li CS, Sun H, Wang BG: Sesquiterpene and acetogenin derivatives from the marine red alga Laurencia okamurai. Mar Drugs. 2012 Dec 14;10(12):2817-25. doi: 10.3390/md10122817. [PubMed:23242203 ]
Li XD, Miao FP, Li K, Ji NY: Sesquiterpenes and acetogenins from the marine red alga Laurencia okamurai. Fitoterapia. 2012 Apr;83(3):518-22. doi: 10.1016/j.fitote.2011.12.018. Epub 2011 Dec 30. [PubMed:22233863 ]

Showing NP-Card for (1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol (NP0059092)

MOL for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

3D MOL for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

3D SDF for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

3D-SDF for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

PDB for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

3D PDB for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

SMILES for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

INCHI for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

Structure for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)

3D Structure for NP0059092 ((1R-cis)-2-(1,2-Dimethyl-3-methylenecyclopentyl)-5-methylphenol)