NP-MRD: Showing NP-Card for (1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol (NP0059083)

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Record Information

Version

2.0

Created at

2022-04-28 04:21:25 UTC

Updated at

2022-04-28 04:21:25 UTC

NP-MRD ID

NP0059083

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol

Description

Isolaurinterol belongs to the class of organic compounds known as meta cresols. These are aromatic compounds containing a meta-cresol moiety, which consists of a benzene ring bearing a methyl group and a hydroxyl group at ring positions 1 and 3, respectively. (1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol is found in Laurencia dendroidea, Laurencia intermedia, Laurencia johnstonii, Laurencia nidifica, Laurencia okamurae, Laurencia pacifica and Palisada intermedia. (1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol was first documented in 2018 (PMID: 30423882). Based on a literature review very few articles have been published on Isolaurinterol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 37  0  0  0  0  0  0  0  0999 V2000
   -1.4026   -0.9154    1.7753 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5394   -0.3469    0.6240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8819    0.0821    0.0545 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8794    0.3409    1.1368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5463    1.3920   -0.6695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0401    1.5207   -0.6224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6054    0.0800   -0.4598 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0143   -0.6141   -1.7580 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8087   -0.0831   -0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5824    1.0851   -0.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9267    1.0201    0.1379 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9691    2.6377    0.1567 Br  0  0  0  0  0  0  0  0  0  0  0  0
    3.5164   -0.1945    0.4098 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9892   -0.2331    0.7219 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7686   -1.3373    0.3937 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4116   -1.2757    0.1030 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6449   -2.4421    0.0825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2663   -1.1152    2.3977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4538   -1.2155    2.1964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2481   -0.6818   -0.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6155   -0.5024    1.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4902    1.2466    0.8609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4386    0.5311    2.1196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9986    2.2366   -0.0959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9662    1.4072   -1.6855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6237    1.9000   -1.5766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7853    2.1451    0.2426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1277   -0.8615   -2.3765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6765    0.0091   -2.3888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5898   -1.5219   -1.4865 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1596    2.0577   -0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2893   -1.2823    0.8358 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2059    0.3027    1.6595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5703    0.2249   -0.1080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2308   -2.2901    0.6069 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1160   -3.3070    0.2863 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  6
  7  2  1  0
  2  1  2  3
  7  9  1  0
  9 16  2  0
 16 17  1  0
 16 15  1  0
 15 13  2  0
 13 14  1  0
 13 11  1  0
 11 12  1  0
 11 10  2  0
  2  3  1  0
 10  9  1  0
  4 21  1  0
  4 22  1  0
  4 23  1  0
  3 20  1  6
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  8 28  1  0
  8 29  1  0
  8 30  1  0
  1 18  1  0
  1 19  1  0
 17 36  1  0
 15 35  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
 10 31  1  0
M  END


  Mrv1652304282206212D          

 17 18  0  0  1  0            999 V2000
    0.9188    2.8480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1738    3.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9807    3.8042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5328    3.1911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2778    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4709    2.2349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2159    1.4503    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8299    1.7934    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4973    1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2819    1.5634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2424    0.5238    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4174    0.5238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1624    1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7273   -0.1436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3819    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2357    4.5888    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    0.6217    4.2458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  5  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  8 13  1  0  0  0  0
 11 14  1  1  0  0  0
  8 15  1  6  0  0  0
  3 16  1  0  0  0  0
  2 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0059083

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CC[C@](C)(C1=C)C1=C(O)C=C(C)C(Br)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H19BrO/c1-9-5-6-15(4,11(9)3)12-8-13(16)10(2)7-14(12)17/h7-9,17H,3,5-6H2,1-2,4H3/t9-,15+/m0/s1

> <INCHI_KEY>
BASXQIKZPQBJIT-BJOHPYRUSA-N

> <FORMULA>
C15H19BrO

> <MOLECULAR_WEIGHT>
295.22

> <EXACT_MASS>
294.061928

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
29.17400176388651

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-bromo-2-[(1R,3S)-1,3-dimethyl-2-methylidenecyclopentyl]-5-methylphenol

> <ALOGPS_LOGP>
5.26

> <JCHEM_LOGP>
5.148714588666667

> <ALOGPS_LOGS>
-5.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.963886798995436

> <JCHEM_PKA_STRONGEST_BASIC>
-6.32720099552128

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
75.6433

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.10e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-bromo-2-[(1R,3S)-1,3-dimethyl-2-methylidenecyclopentyl]-5-methylphenol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       1.715   5.316   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.191   6.781   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.697   7.101   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.728   5.957   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.252   4.492   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.746   4.172   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.270   2.707   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.282   3.348   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.528   2.442   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.993   2.918   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.052   0.978   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.512   0.978   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.037   2.442   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.958  -0.268   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.313   4.492   0.000  0.00  0.00           C+0
HETATM   16 Br   UNK     0       4.173   8.566   0.000  0.00  0.00          Br+0
HETATM   17  C   UNK     0       1.161   7.925   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3   17                                                  
CONECT    3    2    4   16                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9   13   15                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   14                                                  
CONECT   12   11   13                                                       
CONECT   13   12    8                                                       
CONECT   14   11                                                            
CONECT   15    8                                                            
CONECT   16    3                                                            
CONECT   17    2                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₉BrO

Average Mass

295.2200 Da

Monoisotopic Mass

294.06193 Da

IUPAC Name

4-bromo-2-[(1R,3S)-1,3-dimethyl-2-methylidenecyclopentyl]-5-methylphenol

Traditional Name

4-bromo-2-[(1R,3S)-1,3-dimethyl-2-methylidenecyclopentyl]-5-methylphenol

CAS Registry Number

Not Available

SMILES

C[C@H]1CC[C@](C)(C1=C)C1=C(O)C=C(C)C(Br)=C1

InChI Identifier

InChI=1S/C15H19BrO/c1-9-5-6-15(4,11(9)3)12-8-13(16)10(2)7-14(12)17/h7-9,17H,3,5-6H2,1-2,4H3/t9-,15+/m0/s1

InChI Key

BASXQIKZPQBJIT-BJOHPYRUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Laurencia dendroidea	LOTUS Database	35616633
Laurencia intermedia	-	KNApSAcK
Laurencia johnstonii	-	KNApSAcK
Laurencia nidifica	-	KNApSAcK
Laurencia okamurae	-	KNApSAcK
Laurencia pacifica	LOTUS Database	35616633
Palisada intermedia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as meta cresols. These are aromatic compounds containing a meta-cresol moiety, which consists of a benzene ring bearing a methyl group and a hydroxyl group at ring positions 1 and 3, respectively.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

4-halophenol
M-cresol
4-bromophenol
Bromobenzene
Halobenzene
1-hydroxy-2-unsubstituted benzenoid
Toluene
Aryl halide
Aryl bromide
Monocyclic benzene moiety
Organohalogen compound
Organic oxygen compound
Organobromide
Organooxygen compound
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.26	ALOGPS
logP	5.15	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	8.96	ChemAxon
pKa (Strongest Basic)	-6.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	75.64 m³·mol⁻¹	ChemAxon
Polarizability	29.17 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012568

Chemspider ID

9176108

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11000916

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Garcia-Davis S, Sifaoui I, Reyes-Batlle M, Viveros-Valdez E, Pinero JE, Lorenzo-Morales J, Fernandez JJ, Diaz-Marrero AR: Anti-Acanthamoeba Activity of Brominated Sesquiterpenes from Laurencia johnstonii. Mar Drugs. 2018 Nov 11;16(11). pii: md16110443. doi: 10.3390/md16110443. [PubMed:30423882 ]

Showing NP-Card for (1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol (NP0059083)

MOL for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

3D MOL for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

3D SDF for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

3D-SDF for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

PDB for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

3D PDB for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

SMILES for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

INCHI for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

Structure for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)

3D Structure for NP0059083 ((1R-cis)-4-Bromo-2-(1,3-dimethyl-2-methylenecyclopentyl)-5-methylphenol)