NP-MRD: Showing NP-Card for [S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol (NP0059064)

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Record Information

Version

2.0

Created at

2022-04-28 04:20:25 UTC

Updated at

2022-04-28 04:20:25 UTC

NP-MRD ID

NP0059064

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol

Description

Mastigophorene c belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Thus, mastigophorene c is considered to be an isoprenoid. [S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol is found in Herbertus sakuraii and Mastigophora diclados. [S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol was first documented in 2010 (PMID: 20458547). Based on a literature review very few articles have been published on Mastigophorene c.

Structure

MOL 3D MOL SDF PDB SMILES InChI

  Mrv1652304282206202D          

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M  END

     RDKit          3D

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M  END

  Mrv1652304282206202D          

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  7 14  1  1  0  0  0
  4 15  1  0  0  0  0
  3 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 17 22  1  0  0  0  0
 21 23  1  0  0  0  0
 20 24  1  0  0  0  0
 25 19  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 25 29  1  0  0  0  0
 26 30  1  0  0  0  0
 26 31  1  0  0  0  0
 25 32  1  6  0  0  0
  2 33  1  0  0  0  0
  1 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0059064

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C(CC2=CC(=C(O)C(O)=C2)[C@@]2(C)CCCC2(C)C)C(O)=C(O)C(=C1)[C@@]1(C)CCCC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H42O4/c1-18-14-21(29(6)12-8-10-27(29,2)3)26(34)24(32)20(18)15-19-16-22(25(33)23(31)17-19)30(7)13-9-11-28(30,4)5/h14,16-17,31-34H,8-13,15H2,1-7H3/t29-,30-/m1/s1

> <INCHI_KEY>
MCXRIDOZKCUBHM-LOYHVIPDSA-N

> <FORMULA>
C30H42O4

> <MOLECULAR_WEIGHT>
466.662

> <EXACT_MASS>
466.308309832

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
54.06995606816871

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-({3,4-dihydroxy-5-[(1S)-1,2,2-trimethylcyclopentyl]phenyl}methyl)-4-methyl-6-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

> <ALOGPS_LOGP>
6.51

> <JCHEM_LOGP>
8.479267774333332

> <ALOGPS_LOGS>
-5.46

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.037822826208433

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.402412133235046

> <JCHEM_PKA_STRONGEST_BASIC>
-5.813103736391571

> <JCHEM_POLAR_SURFACE_AREA>
80.92

> <JCHEM_REFRACTIVITY>
138.93880000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.64e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-({3,4-dihydroxy-5-[(1S)-1,2,2-trimethylcyclopentyl]phenyl}methyl)-4-methyl-6-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       8.504  -1.199   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.535  -0.054   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.041  -0.374   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.517  -1.839   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.487  -2.983   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.980  -2.663   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.950  -3.808   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.704  -4.713   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.180  -6.177   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.720  -6.177   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.196  -4.713   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.705  -5.017   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.238  -3.579   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.919  -2.663   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.023  -2.159   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.072   0.770   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.578   0.450   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.608   1.594   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      16.115   1.274   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.591  -0.190   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.560  -1.335   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.054  -1.015   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      16.036  -2.799   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      18.097  -0.511   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      17.145   2.419   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      18.391   3.324   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      17.915   4.788   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      16.375   4.788   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      15.899   3.324   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      19.901   3.628   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      19.434   2.190   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      18.176   1.274   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       9.059   1.411   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0       6.998  -0.878   0.000  0.00  0.00           O+0
CONECT    1    2    6   34                                                  
CONECT    2    1    3   33                                                  
CONECT    3    2    4   16                                                  
CONECT    4    3    5   15                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8   11   14                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7   12   13                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    7                                                            
CONECT   15    4                                                            
CONECT   16    3   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   25                                                  
CONECT   20   19   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21   17                                                       
CONECT   23   21                                                            
CONECT   24   20                                                            
CONECT   25   19   26   29   32                                             
CONECT   26   25   27   30   31                                             
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   25                                                       
CONECT   30   26                                                            
CONECT   31   26                                                            
CONECT   32   25                                                            
CONECT   33    2                                                            
CONECT   34    1                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₂O₄

Average Mass

466.6620 Da

Monoisotopic Mass

466.30831 Da

IUPAC Name

3-({3,4-dihydroxy-5-[(1S)-1,2,2-trimethylcyclopentyl]phenyl}methyl)-4-methyl-6-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

Traditional Name

3-({3,4-dihydroxy-5-[(1S)-1,2,2-trimethylcyclopentyl]phenyl}methyl)-4-methyl-6-[(1S)-1,2,2-trimethylcyclopentyl]benzene-1,2-diol

CAS Registry Number

Not Available

SMILES

CC1=C(CC2=CC(=C(O)C(O)=C2)[C@@]2(C)CCCC2(C)C)C(O)=C(O)C(=C1)[C@@]1(C)CCCC1(C)C

InChI Identifier

InChI=1S/C30H42O4/c1-18-14-21(29(6)12-8-10-27(29,2)3)26(34)24(32)20(18)15-19-16-22(25(33)23(31)17-19)30(7)13-9-11-28(30,4)5/h14,16-17,31-34H,8-13,15H2,1-7H3/t29-,30-/m1/s1

InChI Key

MCXRIDOZKCUBHM-LOYHVIPDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Herbertus sakuraii	Plant	KNApSAcK
Mastigophora diclados	-	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Cuparane sesquiterpenoid
Herbertane sesquiterpenoid
Diphenylmethane
Catechol
M-cresol
P-cresol
1-hydroxy-2-unsubstituted benzenoid
Phenol
1-hydroxy-4-unsubstituted benzenoid
Toluene
Monocyclic benzene moiety
Benzenoid
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.51	ALOGPS
logP	8.48	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	9.4	ChemAxon
pKa (Strongest Basic)	-5.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	80.92 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	138.94 m³·mol⁻¹	ChemAxon
Polarizability	54.07 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012549

Chemspider ID

8429480

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10253995

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Komala I, Ito T, Nagashima F, Yagi Y, Asakawa Y: Cytotoxic, radical scavenging and antimicrobial activities of sesquiterpenoids from the Tahitian liverwort Mastigophora diclados (Brid.) Nees (Mastigophoraceae). J Nat Med. 2010 Oct;64(4):417-22. doi: 10.1007/s11418-010-0423-8. Epub 2010 May 12. [PubMed:20458547 ]

Showing NP-Card for [S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol (NP0059064)

MOL for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D MOL for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D SDF for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D-SDF for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

PDB for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D PDB for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

SMILES for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

INCHI for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

Structure for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D Structure for NP0059064 ([S-(R*,R*)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

Showing NP-Card for [S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol (NP0059064)

MOL for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D MOL for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D SDF for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D-SDF for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

PDB for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D PDB for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

SMILES for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

INCHI for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

Structure for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)

3D Structure for NP0059064 ([S-(R,R)]-3-[[3,4-Dihydroxy-5-(1,2,2-trimethylcyclopentyl)phenyl]methyl]-4-methyl-6-(1,2,2-trimethylcyclopentyl)-1,2-benzenediol)