NP-MRD: Showing NP-Card for (-)-alpha-Herbertenol (NP0059058)

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Record Information

Version

2.0

Created at

2022-04-28 04:20:09 UTC

Updated at

2022-04-28 04:20:09 UTC

NP-MRD ID

NP0059058

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-alpha-Herbertenol

Description

Alpha-herbertenol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Thus, Alpha-herbertenol is considered to be an isoprenoid. (-)-alpha-Herbertenol is found in Herberta adunca, Herbertus aduncus, Herbertus dicranus, Herbertus sakuraii, Mastigophora diclados, Tylimanthus renifolius and Wettsteinia schusteriana. (-)-alpha-Herbertenol was first documented in 2003 (PMID: 14629996). Based on a literature review a small amount of articles have been published on Alpha-herbertenol (PMID: 20458547) (PMID: 16836410) (PMID: 12868926).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
    3.3080    1.7962    1.4641 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6990    0.7543    0.5764 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5092   -0.1404   -0.1056 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8940   -1.0680   -0.9005 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5219   -1.1195   -1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0129   -2.1032   -1.8608 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6915   -0.2294   -0.3482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7298   -0.3894   -0.5544 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0383   -0.2287   -2.0104 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1635   -1.7197    0.0329 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0550   -1.3868    1.5300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6045    0.0366    1.6170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6472    0.5177    0.2028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0610    0.1762   -0.3122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4617    1.9707   -0.0142 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3255    0.6875    0.4390 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0184    2.7911    1.0598 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9059    1.6683    2.4949 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3975    1.7212    1.4225 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5951   -0.0922   -0.0007 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5437   -1.7702   -1.4348 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5631   -2.7576   -2.3624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5949    0.7122   -2.2394 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0900   -0.1335   -2.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5671   -1.1331   -2.4293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2266   -1.9369   -0.1814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4913   -2.5485   -0.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6124   -2.0978    2.1424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0095   -1.4225    1.8442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6428   -0.0967    2.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0797    0.6601    2.3292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6750    1.0936   -0.4247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6142   -0.4726    0.3967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0410   -0.3420   -1.2690 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6648    2.1675   -0.7737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3659    2.4750   -0.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3179    2.5718    0.9248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7495    1.3885    0.9793 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 16  2  0
 16  7  1  0
  7  5  2  0
  5  6  1  0
  5  4  1  0
  4  3  2  0
  7  8  1  0
  8  9  1  6
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  6
 13 15  1  0
  3  2  1  0
 13  8  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
 16 38  1  0
  6 22  1  0
  4 21  1  0
  3 20  1  0
  9 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
 10 27  1  0
 11 28  1  0
 11 29  1  0
 12 30  1  0
 12 31  1  0
 14 32  1  0
 14 33  1  0
 14 34  1  0
 15 35  1  0
 15 36  1  0
 15 37  1  0
M  END


  Mrv1652304282206202D          

 16 17  0  0  1  0            999 V2000
    0.5101    2.8480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0419    2.2349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8489    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1038    3.1911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5518    3.8042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2552    3.6327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9108    3.3626    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4009    1.7934    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0684    1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8134    0.5238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9884    0.5238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7335    1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0752    1.1454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1751    1.9157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9530    2.4065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3171    2.6765    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  8  3  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
  8 15  1  1  0  0  0
  1 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0059058

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC(=C(O)C=C1)[C@@]1(C)CCCC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O/c1-11-6-7-13(16)12(10-11)15(4)9-5-8-14(15,2)3/h6-7,10,16H,5,8-9H2,1-4H3/t15-/m1/s1

> <INCHI_KEY>
OJURUWLXPJSRPZ-OAHLLOKOSA-N

> <FORMULA>
C15H22O

> <MOLECULAR_WEIGHT>
218.34

> <EXACT_MASS>
218.167065328

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
26.227437752368772

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-methyl-2-[(1S)-1,2,2-trimethylcyclopentyl]phenol

> <ALOGPS_LOGP>
5.31

> <JCHEM_LOGP>
4.7406357980000005

> <ALOGPS_LOGS>
-4.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.921452740846796

> <JCHEM_PKA_STRONGEST_BASIC>
-5.004320701297165

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
68.1695

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.33e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-methyl-2-[(1S)-1,2,2-trimethylcyclopentyl]phenol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       0.952   5.316   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.078   4.172   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.585   4.492   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.060   5.957   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.030   7.101   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.476   6.781   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -3.567   6.277   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.615   3.348   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.861   2.442   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.385   0.978   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.845   0.978   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.369   2.442   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.140   2.138   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.327   3.576   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.646   4.492   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.459   4.996   0.000  0.00  0.00           C+0
CONECT    1    2    6   16                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    4                                                            
CONECT    8    3    9   12   15                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    8   13   14                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    8                                                            
CONECT   16    1                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Value	Source
a-Herbertenol	Generator
Α-herbertenol	Generator

Chemical Formula

C₁₅H₂₂O

Average Mass

218.3400 Da

Monoisotopic Mass

218.16707 Da

IUPAC Name

4-methyl-2-[(1S)-1,2,2-trimethylcyclopentyl]phenol

Traditional Name

4-methyl-2-[(1S)-1,2,2-trimethylcyclopentyl]phenol

CAS Registry Number

Not Available

SMILES

CC1=CC(=C(O)C=C1)[C@@]1(C)CCCC1(C)C

InChI Identifier

InChI=1S/C15H22O/c1-11-6-7-13(16)12(10-11)15(4)9-5-8-14(15,2)3/h6-7,10,16H,5,8-9H2,1-4H3/t15-/m1/s1

InChI Key

OJURUWLXPJSRPZ-OAHLLOKOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Herberta adunca	-	KNApSAcK
Herbertus aduncus	LOTUS Database	35616633
Herbertus dicranus	LOTUS Database	35616633
Herbertus sakuraii	Plant	KNApSAcK
Mastigophora diclados	-	KNApSAcK
Tylimanthus renifolius	-	KNApSAcK
Wettsteinia schusteriana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Herbertane sesquiterpenoid
Sesquiterpenoid
P-cresol
1-hydroxy-2-unsubstituted benzenoid
Toluene
Phenol
Benzenoid
Monocyclic benzene moiety
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.31	ALOGPS
logP	4.74	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	10.92	ChemAxon
pKa (Strongest Basic)	-5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	68.17 m³·mol⁻¹	ChemAxon
Polarizability	26.23 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012543

Chemspider ID

10005581

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11830934

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Komala I, Ito T, Nagashima F, Yagi Y, Asakawa Y: Cytotoxic, radical scavenging and antimicrobial activities of sesquiterpenoids from the Tahitian liverwort Mastigophora diclados (Brid.) Nees (Mastigophoraceae). J Nat Med. 2010 Oct;64(4):417-22. doi: 10.1007/s11418-010-0423-8. Epub 2010 May 12. [PubMed:20458547 ]
Feld H, Zapp J, Becker H: Secondary metabolites from the liverwort Tylimanthus renifolius. Phytochemistry. 2003 Dec;64(8):1335-40. doi: 10.1016/j.phytochem.2003.08.021. [PubMed:14629996 ]
Matsuda T, Shigeno M, Makino M, Murakami M: Enantioselective C-C bond cleavage creating chiral quaternary carbon centers. Org Lett. 2006 Jul 20;8(15):3379-81. doi: 10.1021/ol061359g. [PubMed:16836410 ]
Kita Y, Futamura J, Ohba Y, Sawama Y, Ganesh JK, Fujioka H: The rearrangement of 2,3-epoxysulfonates and its application to natural products syntheses: formal synthesis of (-)-aphanorphine and total syntheses of (-)-alpha-herbertenol and (-)-herbertenediol. J Org Chem. 2003 Jul 25;68(15):5917-24. doi: 10.1021/jo034573g. [PubMed:12868926 ]

Showing NP-Card for (-)-alpha-Herbertenol (NP0059058)

MOL for NP0059058 ((-)-alpha-Herbertenol)

3D MOL for NP0059058 ((-)-alpha-Herbertenol)

3D SDF for NP0059058 ((-)-alpha-Herbertenol)

3D-SDF for NP0059058 ((-)-alpha-Herbertenol)

PDB for NP0059058 ((-)-alpha-Herbertenol)

3D PDB for NP0059058 ((-)-alpha-Herbertenol)

SMILES for NP0059058 ((-)-alpha-Herbertenol)

INCHI for NP0059058 ((-)-alpha-Herbertenol)

Structure for NP0059058 ((-)-alpha-Herbertenol)

3D Structure for NP0059058 ((-)-alpha-Herbertenol)