NP-MRD: Showing NP-Card for 4,5-Dihydroxykleinifulgin (NP0058660)

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Record Information

Version

2.0

Created at

2022-04-28 03:59:32 UTC

Updated at

2022-04-28 03:59:32 UTC

NP-MRD ID

NP0058660

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,5-Dihydroxykleinifulgin

Description

(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]Undecan-3-yl (2Z)-2-methylbut-2-enoate belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. 4,5-Dihydroxykleinifulgin is found in Kleinia fulgens. Based on a literature review very few articles have been published on (1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]Undecan-3-yl (2Z)-2-methylbut-2-enoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282205592D          

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M  END

     RDKit          3D

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M  END


  Mrv1652304282205592D          

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    3.5724    2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2494    3.3862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5390    3.7413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1517    4.4121    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 10  1  0  0  0  0
 10 11  1  6  0  0  0
  9 11  1  0  0  0  0
  9 12  1  1  0  0  0
  8 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 16 19  1  0  0  0  0
  7 20  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
  6 27  1  1  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
  4 30  1  6  0  0  0
  3 31  1  6  0  0  0
  3 32  1  1  0  0  0
  2 33  1  6  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 36 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0058660

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](C)C(=O)O[C@H]1[C@H](C[C@@H](O)[C@](C)(O)[C@H](C[C@H]2O[C@@]2(C)[C@H]1OC(=O)C(\C)=C/C)OC(=O)C(\C)=C/C)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C30H46O9/c1-11-17(6)26(32)36-22-15-23-30(10,39-23)25(38-28(34)19(8)13-3)24(37-27(33)18(7)12-2)20(16(4)5)14-21(31)29(22,9)35/h11,13,18,20-25,31,35H,4,12,14-15H2,1-3,5-10H3/b17-11-,19-13-/t18-,20-,21-,22+,23-,24+,25+,29+,30-/m1/s1

> <INCHI_KEY>
NLVJEJJSYMKFKV-MDIUTXQVSA-N

> <FORMULA>
C30H46O9

> <MOLECULAR_WEIGHT>
550.689

> <EXACT_MASS>
550.314183061

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
85

> <JCHEM_AVERAGE_POLARIZABILITY>
59.08127620707717

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]undecan-3-yl (2Z)-2-methylbut-2-enoate

> <ALOGPS_LOGP>
4.09

> <JCHEM_LOGP>
5.251799910666666

> <ALOGPS_LOGS>
-4.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.754393146278609

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.029882093456212

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2772719512214072

> <JCHEM_POLAR_SURFACE_AREA>
131.89000000000001

> <JCHEM_REFRACTIVITY>
145.89140000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.95e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]undecan-3-yl (2Z)-2-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.000   4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.000   7.700   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334   5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667   3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.000   3.080   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -0.000   1.540   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.104   0.976   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.001   0.770   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.668   0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.001   5.390   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.335   3.080   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.668   5.390   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.668   6.930   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.336   5.390   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.667   6.160   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.667   7.700   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.199   6.321   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -0.000   9.240   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -2.873   6.984   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -2.150   8.236   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      -2.667   4.620   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -4.001   5.390   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -4.001   6.930   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      -5.335   4.620   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -6.668   5.390   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -6.668   6.930   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -5.335   3.080   0.000  0.00  0.00           C+0
CONECT    1    2   10                                                       
CONECT    2    1    3   33                                                  
CONECT    3    2    4   31   32                                             
CONECT    4    3    5   30                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8   20                                                  
CONECT    8    7    9   13                                                  
CONECT    9    8   10   11   12                                             
CONECT   10    9    1   11                                                  
CONECT   11   10    9                                                       
CONECT   12    9                                                            
CONECT   13    8   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   16                                                            
CONECT   20    7   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
CONECT   27    6   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30    4                                                            
CONECT   31    3                                                            
CONECT   32    3                                                            
CONECT   33    2   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37   39                                                  
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   36                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   80    0
END

View in JSmol

Synonyms

Value	Source
(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-Dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]undecan-3-yl (2Z)-2-methylbut-2-enoic acid	Generator

Chemical Formula

C₃₀H₄₆O₉

Average Mass

550.6890 Da

Monoisotopic Mass

550.31418 Da

IUPAC Name

(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]undecan-3-yl (2Z)-2-methylbut-2-enoate

Traditional Name

(1R,3S,4S,5R,7R,8S,9S,10R)-4,5-dihydroxy-4,10-dimethyl-9-{[(2Z)-2-methylbut-2-enoyl]oxy}-8-{[(2R)-2-methylbutanoyl]oxy}-7-(prop-1-en-2-yl)-11-oxabicyclo[8.1.0]undecan-3-yl (2Z)-2-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)C(=O)O[C@H]1[C@H](C[C@@H](O)[C@](C)(O)[C@H](C[C@H]2O[C@@]2(C)[C@H]1OC(=O)C(\C)=C/C)OC(=O)C(\C)=C/C)C(C)=C

InChI Identifier

InChI=1S/C30H46O9/c1-11-17(6)26(32)36-22-15-23-30(10,39-23)25(38-28(34)19(8)13-3)24(37-27(33)18(7)12-2)20(16(4)5)14-21(31)29(22,9)35/h11,13,18,20-25,31,35H,4,12,14-15H2,1-3,5-10H3/b17-11-,19-13-/t18-,20-,21-,22+,23-,24+,25+,29+,30-/m1/s1

InChI Key

NLVJEJJSYMKFKV-MDIUTXQVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kleinia fulgens	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Tricarboxylic acid or derivatives
Fatty acid ester
Fatty acyl
Cyclitol or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Secondary alcohol
Carboxylic acid ester
1,2-diol
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.09	ALOGPS
logP	5.25	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	13.03	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	131.89 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	145.89 m³·mol⁻¹	ChemAxon
Polarizability	59.08 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162975065

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 4,5-Dihydroxykleinifulgin (NP0058660)

MOL for NP0058660 (4,5-Dihydroxykleinifulgin)

3D MOL for NP0058660 (4,5-Dihydroxykleinifulgin)

3D SDF for NP0058660 (4,5-Dihydroxykleinifulgin)

3D-SDF for NP0058660 (4,5-Dihydroxykleinifulgin)

PDB for NP0058660 (4,5-Dihydroxykleinifulgin)

3D PDB for NP0058660 (4,5-Dihydroxykleinifulgin)

SMILES for NP0058660 (4,5-Dihydroxykleinifulgin)

INCHI for NP0058660 (4,5-Dihydroxykleinifulgin)

Structure for NP0058660 (4,5-Dihydroxykleinifulgin)

3D Structure for NP0058660 (4,5-Dihydroxykleinifulgin)