NP-MRD: Showing NP-Card for (-)-Aplysistatin (NP0058210)

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Record Information

Version

2.0

Created at

2022-04-28 03:34:22 UTC

Updated at

2022-04-28 03:34:22 UTC

NP-MRD ID

NP0058210

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-Aplysistatin

Description

Aplysistatin belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. (-)-Aplysistatin is found in Aplysia angasi, Laurencia filiformis, Laurencia intricata, Laurencia luzonensis and Laurencia saitoi. (-)-Aplysistatin was first documented in 2004 (PMID: 15281167). Based on a literature review a small amount of articles have been published on Aplysistatin (PMID: 27689238) (PMID: 19772936) (PMID: 19623985) (PMID: 19471208).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 42  0  0  0  0  0  0  0  0999 V2000
   -2.4585    1.4712   -0.2740 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8185    0.3065    0.4896 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2277    0.5661    1.9542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5814   -0.9154    0.0753 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2585   -0.7495   -1.7242 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -1.6858   -2.1034    0.1545 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6340   -1.9012   -0.9097 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2586   -0.7061   -0.5924 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5568   -0.0543   -1.9370 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4433   -1.2739   -0.1352 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2793   -0.5155    0.5971 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6794   -1.0853    0.5799 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4226   -0.3263   -0.3277 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8913    0.9383   -0.3503 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4895    1.9901   -0.6262 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4888    0.8355    0.0086 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5576    1.7399   -0.1476 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1386    1.6771    0.1918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3532    0.2371    0.3810 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3610    2.4281    0.2682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2064    1.4833   -1.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5697    1.2577   -0.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3220    0.4561    2.0141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9578    1.6101    2.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7515   -0.1866    2.6257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4556   -1.0987    0.7274 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2650   -3.0016   -0.1386 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2544   -2.2775    1.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0803   -2.8449   -1.0136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1829   -1.7516   -1.8677 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1365    0.9669   -2.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1294   -0.6132   -2.7957 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6673   -0.0392   -2.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0045   -0.4256    1.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6846   -2.1709    0.3532 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1734   -0.9326    1.5816 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8901    2.6605   -0.5896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5045    2.2334   -0.5170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0024    2.1703    1.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0393   -0.0551    1.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6
  2  3  1  0
  2  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  6
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 19  2  1  0
 19  8  1  0
 16 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  3 24  1  0
  3 25  1  0
  4 26  1  1
  6 27  1  0
  6 28  1  0
  7 29  1  0
  7 30  1  0
  9 31  1  0
  9 32  1  0
  9 33  1  0
 11 34  1  1
 12 35  1  0
 12 36  1  0
 17 37  1  0
 18 38  1  0
 18 39  1  0
 19 40  1  1
M  END


  Mrv1652304282205342D          

 19 21  0  0  1  0            999 V2000
    5.6713    1.5848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8857    1.8368    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2747    1.2825    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4493    0.4761    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2349    0.2242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8459    0.7785    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.6314    0.5265    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.0105   -0.5697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7675   -0.4058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9277   -0.1631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028   -0.1539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5956    0.4969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7882    1.2991    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5354    1.6487    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0847    1.7301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4574    1.1943    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7732    0.4321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3421   -0.2713    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1609    2.0996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  5  8  1  0  0  0  0
  5  9  1  0  0  0  0
  4 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 13 12  1  6  0  0  0
 13 14  1  0  0  0  0
  3 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  2  0  0  0  0
  3 19  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0058210

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)[C@@H](Br)CC[C@]2(C)O[C@H]3COC(=O)C3=CC[C@@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C15H21BrO3/c1-14(2)11-5-4-9-10(8-18-13(9)17)19-15(11,3)7-6-12(14)16/h4,10-12H,5-8H2,1-3H3/t10-,11-,12-,15-/m0/s1

> <INCHI_KEY>
BEMNKPXNGWTBLQ-ASHKBJFXSA-N

> <FORMULA>
C15H21BrO3

> <MOLECULAR_WEIGHT>
329.234

> <EXACT_MASS>
328.067408

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
31.027777850519044

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3R,10S,12S)-12-bromo-1,11,11-trimethyl-2,5-dioxatricyclo[8.4.0.0^{3,7}]tetradec-7-en-6-one

> <ALOGPS_LOGP>
3.85

> <JCHEM_LOGP>
3.3778253663333317

> <ALOGPS_LOGS>
-4.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.236926500137958

> <JCHEM_POLAR_SURFACE_AREA>
35.53

> <JCHEM_REFRACTIVITY>
76.61269999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.61e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3R,10S,12S)-12-bromo-1,11,11-trimethyl-2,5-dioxatricyclo[8.4.0.0^{3,7}]tetradec-7-en-6-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      10.586   2.958   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.120   3.429   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.979   2.394   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.305   0.889   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.772   0.418   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.912   1.453   0.000  0.00  0.00           C+0
HETATM    7 Br   UNK     0      12.379   0.983   0.000  0.00  0.00          Br+0
HETATM    8  C   UNK     0       9.353  -1.063   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.766  -0.758   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.332  -0.304   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.792  -0.287   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.845   0.927   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.205   2.425   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       6.599   3.078   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.892   3.230   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.721   2.229   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.310   0.807   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       2.505  -0.507   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       7.767   3.919   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   14   19                                             
CONECT    4    3    5   10                                                  
CONECT    5    4    6    8    9                                             
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5                                                            
CONECT    9    5                                                            
CONECT   10    4   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13    3                                                       
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   12   18                                                  
CONECT   18   17                                                            
CONECT   19    3                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₁BrO₃

Average Mass

329.2340 Da

Monoisotopic Mass

328.06741 Da

IUPAC Name

(1S,3R,10S,12S)-12-bromo-1,11,11-trimethyl-2,5-dioxatricyclo[8.4.0.0^{3,7}]tetradec-7-en-6-one

Traditional Name

(1S,3R,10S,12S)-12-bromo-1,11,11-trimethyl-2,5-dioxatricyclo[8.4.0.0^{3,7}]tetradec-7-en-6-one

CAS Registry Number

Not Available

SMILES

CC1(C)[C@@H](Br)CC[C@]2(C)O[C@H]3COC(=O)C3=CC[C@@H]12

InChI Identifier

InChI=1S/C15H21BrO3/c1-14(2)11-5-4-9-10(8-18-13(9)17)19-15(11,3)7-6-12(14)16/h4,10-12H,5-8H2,1-3H3/t10-,11-,12-,15-/m0/s1

InChI Key

BEMNKPXNGWTBLQ-ASHKBJFXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aplysia angasi	Animalia	KNApSAcK
Laurencia filiformis	LOTUS Database	35616633
Laurencia intricata	LOTUS Database	35616633
Laurencia luzonensis	-	KNApSAcK
Laurencia saitoi	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

Gamma butyrolactone
Tetrahydrofuran
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Oxacycle
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Organobromide
Organohalogen compound
Organic oxygen compound
Carbonyl group
Alkyl halide
Alkyl bromide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.85	ALOGPS
logP	3.38	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	35.53 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	76.61 m³·mol⁻¹	ChemAxon
Polarizability	31.03 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011548

Chemspider ID

90569

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

100219

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Bouanou H, Gil JA, Alvarez-Manzaneda R, Chahboun R, Alvarez-Manzaneda E: Oxidative Coupling of (-)-Sclareol and Related Diols Leading to Oxepane Terpenoids. J Org Chem. 2016 Oct 21;81(20):10002-10008. doi: 10.1021/acs.joc.6b01834. Epub 2016 Oct 7. [PubMed:27689238 ]
Koshimura M, Utsukihara T, Kawamoto M, Saito M, Horiuchi CA, Kuniyoshi M: Biotransformation of bromosesquiterpenes by marine fungi. Phytochemistry. 2009 Dec;70(17-18):2023-6. doi: 10.1016/j.phytochem.2009.08.021. Epub 2009 Sep 21. [PubMed:19772936 ]
Su H, Yuan Z, Li J, Guo S, Han L, Zhu X, Shi D: [Studies on chemical constituents of Laurencia saitoi]. Zhongguo Zhong Yao Za Zhi. 2009 Apr;34(7):871-4. [PubMed:19623985 ]
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Showing NP-Card for (-)-Aplysistatin (NP0058210)

MOL for NP0058210 ((-)-Aplysistatin)

3D MOL for NP0058210 ((-)-Aplysistatin)

3D SDF for NP0058210 ((-)-Aplysistatin)

3D-SDF for NP0058210 ((-)-Aplysistatin)

PDB for NP0058210 ((-)-Aplysistatin)

3D PDB for NP0058210 ((-)-Aplysistatin)

SMILES for NP0058210 ((-)-Aplysistatin)

INCHI for NP0058210 ((-)-Aplysistatin)

Structure for NP0058210 ((-)-Aplysistatin)

3D Structure for NP0058210 ((-)-Aplysistatin)