NP-MRD: Showing NP-Card for 10-Sesquigeranic acid (NP0058181)

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Record Information

Version

2.0

Created at

2022-04-28 03:33:08 UTC

Updated at

2022-04-28 03:33:08 UTC

NP-MRD ID

NP0058181

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-Sesquigeranic acid

Description

7-Methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle. 10-Sesquigeranic acid is found in Conyza schimperi. 7-Methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid is a very weakly acidic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 40  0  0  0  0  0  0  0  0999 V2000
   -4.1243    1.6610   -0.7082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7727    0.3918   -0.0091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8293   -0.6322    0.2074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5460    0.1477    0.4246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4146    1.0832    0.2679 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2682    0.4572   -0.5439 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2385   -0.7518    0.1151 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2554   -1.9616   -0.3758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2262   -2.3354   -1.6706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7275   -1.5963   -2.5253 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1454   -3.7025   -2.0780 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7960   -0.6191    1.5307 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9977    0.2961    1.5676 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1099   -0.1986    0.7381 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6595    0.5464   -0.1915 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3054    1.9318   -0.5690 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8042   -0.0451   -1.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7937    1.6360   -1.7763 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2272    1.7309   -0.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6949    2.5423   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6004   -0.2530    0.9221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3803   -0.7548   -0.7633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3991   -1.5891    0.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3414   -0.7829    0.9236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0385    1.3350    1.2774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7382    1.9987   -0.2892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6848    0.2523   -1.5208 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5063    1.2446   -0.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6866   -2.7483    0.2909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0214   -4.2096   -2.2009 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0174   -1.6152    1.8926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0305   -0.1990    2.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3730    0.2887    2.6306 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7595    1.3202    1.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5137   -1.2193    0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2802    2.4483   -0.8617 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6231    1.9199   -1.4482 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9447    2.4892    0.2953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7424    0.4723   -0.7747 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5337    0.1531   -2.0803 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8572   -1.1328   -0.8621 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  3
 15 16  1  0
 15 17  1  0
  7  8  2  3
  8  9  1  0
  9 11  1  0
  9 10  2  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
 12 31  1  0
 12 32  1  0
 13 33  1  0
 13 34  1  0
 14 35  1  0
 16 36  1  0
 16 37  1  0
 16 38  1  0
 17 39  1  0
 17 40  1  0
 17 41  1  0
  8 29  1  0
 11 30  1  0
M  END


  Mrv1533004251505402D          

 17 16  0  0  0  0            999 V2000
    5.7750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    3.5724    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  2 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0058181

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(CCC=C(C)C)=CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O2/c1-12(2)7-5-9-14(11-15(16)17)10-6-8-13(3)4/h7-8,11H,5-6,9-10H2,1-4H3,(H,16,17)

> <INCHI_KEY>
YFNSZIGSQKZOEF-UHFFFAOYSA-N

> <FORMULA>
C15H24O2

> <MOLECULAR_WEIGHT>
236.355

> <EXACT_MASS>
236.177630013

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
28.98264402379383

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid

> <ALOGPS_LOGP>
4.50

> <JCHEM_LOGP>
4.482372109

> <ALOGPS_LOGS>
-3.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.346221747141444

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
74.8521

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.41e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0      10.780   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.240   2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.470   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.160   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.850   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.620   5.335   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.850   6.668   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       6.160   5.335   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.770   1.334   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.470   1.334   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    6   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17    2                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   32    0
END

View in JSmol

Synonyms

Value	Source
7-Methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoate	Generator
3-(4-Methyl-3-pentenyl)-7-methyl-2,6-octadienoate	Generator

Chemical Formula

C₁₅H₂₄O₂

Average Mass

236.3550 Da

Monoisotopic Mass

236.17763 Da

IUPAC Name

7-methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid

Traditional Name

7-methyl-3-(4-methylpent-3-en-1-yl)octa-2,6-dienoic acid

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(CCC=C(C)C)=CC(O)=O

InChI Identifier

InChI=1S/C15H24O2/c1-12(2)7-5-9-14(11-15(16)17)10-6-8-13(3)4/h7-8,11H,5-6,9-10H2,1-4H3,(H,16,17)

InChI Key

YFNSZIGSQKZOEF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Conyza schimperi	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Acyclic monoterpenoids

Alternative Parents

Substituents

Acyclic monoterpenoid
Medium-chain fatty acid
Branched fatty acid
Fatty acyl
Fatty acid
Unsaturated fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.5	ALOGPS
logP	4.48	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	5.35	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	74.85 m³·mol⁻¹	ChemAxon
Polarizability	28.98 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11075431

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 10-Sesquigeranic acid (NP0058181)

MOL for NP0058181 (10-Sesquigeranic acid)

3D MOL for NP0058181 (10-Sesquigeranic acid)

3D SDF for NP0058181 (10-Sesquigeranic acid)

3D-SDF for NP0058181 (10-Sesquigeranic acid)

PDB for NP0058181 (10-Sesquigeranic acid)

3D PDB for NP0058181 (10-Sesquigeranic acid)

SMILES for NP0058181 (10-Sesquigeranic acid)

INCHI for NP0058181 (10-Sesquigeranic acid)

Structure for NP0058181 (10-Sesquigeranic acid)

3D Structure for NP0058181 (10-Sesquigeranic acid)