NP-MRD: Showing NP-Card for Rhipocephenal (NP0058089)

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Record Information

Version

2.0

Created at

2022-04-28 03:28:47 UTC

Updated at

2022-04-28 03:28:47 UTC

NP-MRD ID

NP0058089

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Rhipocephenal

Description

Rhipocephenal belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Rhipocephenal is found in Rhipocephalus phoenix. Based on a literature review very few articles have been published on Rhipocephenal.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 37  0  0  0  0  0  0  0  0999 V2000
   -0.7496   -0.9797   -1.2548 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0189   -0.0591    0.1632 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2061   -0.7237    0.0178 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3631   -0.3929    0.6422 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5439   -1.1837    0.3891 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7298   -0.9663    0.9208 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0004    0.1510    1.8400 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1320    0.2604    2.2624 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8581   -1.8842    0.5414 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3472   -2.5640    1.7537 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2914   -2.0519    2.3196 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0572    0.5432    0.2949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3325    0.5896   -0.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3211    1.3947    0.1140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6275    1.3579   -0.5894 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5148    1.9958   -1.9540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6761    1.9967    0.2866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9973    0.0060   -0.8399 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1659   -1.4338   -1.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9428   -0.1098   -1.8031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3354   -1.5656   -0.6557 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3554   -1.6312   -0.5879 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3513    0.4288    1.3004 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4822   -2.0538   -0.2989 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1665    0.8212    2.0882 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4802   -2.6337   -0.2134 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6179   -1.2860    0.0240 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8804   -3.4778    2.1252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9261    1.2927    1.2225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6331   -0.0196   -1.1250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1511    2.0479    0.9264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5729    2.6015   -2.0356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4495    1.1949   -2.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3459    2.6209   -2.2623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4327    2.9616    0.6937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8653    1.2367    1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6359    2.0979   -0.2880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4240   -0.5826   -0.2594 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  9  1  0
  9 10  1  0
 10 11  2  0
  6  7  1  0
  7  8  2  0
  2 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 15 18  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  3 22  1  0
  4 23  1  0
  5 24  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
  7 25  1  0
 12 29  1  0
 13 30  1  0
 14 31  1  0
 16 32  1  0
 16 33  1  0
 16 34  1  0
 17 35  1  0
 17 36  1  0
 17 37  1  0
 18 38  1  0
M  END


  Mrv1652304282205282D          

 18 17  0  0  0  0            999 V2000
    5.3625    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    2.4454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 10 14  1  0  0  0  0
 14 15  2  0  0  0  0
  6 16  1  0  0  0  0
  2 17  1  0  0  0  0
  2 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0058089

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(\C=C\C=C(\CC=O)C=O)=C/C=C/C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O3/c1-13(7-5-10-15(2,3)18)6-4-8-14(12-17)9-11-16/h4-8,10-12,18H,9H2,1-3H3/b6-4+,10-5+,13-7+,14-8-

> <INCHI_KEY>
GPAHXNBSOVOABW-HTMFJWCOSA-N

> <FORMULA>
C15H20O3

> <MOLECULAR_WEIGHT>
248.322

> <EXACT_MASS>
248.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
28.63124234716573

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z)-2-[(2E,4E,6E)-8-hydroxy-4,8-dimethylnona-2,4,6-trien-1-ylidene]butanedial

> <ALOGPS_LOGP>
2.93

> <JCHEM_LOGP>
1.3636160000000002

> <ALOGPS_LOGS>
-3.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.91152955098122

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.15645076736265

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5250576367261366

> <JCHEM_POLAR_SURFACE_AREA>
54.370000000000005

> <JCHEM_REFRACTIVITY>
77.8071

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.74e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-2-[(2E,4E,6E)-8-hydroxy-4,8-dimethylnona-2,4,6-trien-1-ylidene]butanedial

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      10.010   6.668   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.470   4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.160   2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.310  -1.334   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -3.080  -2.667   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -0.770   1.334   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.310   1.334   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.850   4.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.574   4.565   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   17   18                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   16                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   10   15                                                       
CONECT   15   14                                                            
CONECT   16    6                                                            
CONECT   17    2                                                            
CONECT   18    2                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₀O₃

Average Mass

248.3220 Da

Monoisotopic Mass

248.14124 Da

IUPAC Name

(2Z)-2-[(2E,4E,6E)-8-hydroxy-4,8-dimethylnona-2,4,6-trien-1-ylidene]butanedial

Traditional Name

(2Z)-2-[(2E,4E,6E)-8-hydroxy-4,8-dimethylnona-2,4,6-trien-1-ylidene]butanedial

CAS Registry Number

Not Available

SMILES

C\C(\C=C\C=C(\CC=O)C=O)=C/C=C/C(C)(C)O

InChI Identifier

InChI=1S/C15H20O3/c1-13(7-5-10-15(2,3)18)6-4-8-14(12-17)9-11-16/h4-8,10-12,18H,9H2,1-3H3/b6-4+,10-5+,13-7+,14-8-

InChI Key

GPAHXNBSOVOABW-HTMFJWCOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rhipocephalus phoenix	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Farsesane sesquiterpenoid
Sesquiterpenoid
Medium-chain aldehyde
Tertiary alcohol
Enal
Alpha-hydrogen aldehyde
Alpha,beta-unsaturated aldehyde
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.93	ALOGPS
logP	1.36	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	14.16	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	54.37 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	77.81 m³·mol⁻¹	ChemAxon
Polarizability	28.63 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011402

Chemspider ID

10355790

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23247441

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Rhipocephenal (NP0058089)

MOL for NP0058089 (Rhipocephenal)

3D MOL for NP0058089 (Rhipocephenal)

3D SDF for NP0058089 (Rhipocephenal)

3D-SDF for NP0058089 (Rhipocephenal)

PDB for NP0058089 (Rhipocephenal)

3D PDB for NP0058089 (Rhipocephenal)

SMILES for NP0058089 (Rhipocephenal)

INCHI for NP0058089 (Rhipocephenal)

Structure for NP0058089 (Rhipocephenal)

3D Structure for NP0058089 (Rhipocephenal)