Np mrd loader

Record Information
Version2.0
Created at2022-04-28 03:24:33 UTC
Updated at2022-04-28 03:24:33 UTC
NP-MRD IDNP0058059
Secondary Accession NumbersNone
Natural Product Identification
Common NameAgelasidine A
DescriptionAgelasidine A belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Agelasidine A is found in Agelas nakamurai and Agelas sp.. Agelasidine A was first documented in 2006 (PMID: 16989304). Based on a literature review a small amount of articles have been published on Agelasidine A (PMID: 35200638) (PMID: 31502358) (PMID: 31394028) (PMID: 30735362).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC18H33N3O2S
Average Mass355.5400 Da
Monoisotopic Mass355.22935 Da
IUPAC NameN-{2-[(3S,6E)-3,7,11-trimethyldodeca-1,6,10-triene-3-sulfonyl]ethyl}guanidine
Traditional NameN-{2-[(3S,6E)-3,7,11-trimethyldodeca-1,6,10-triene-3-sulfonyl]ethyl}guanidine
CAS Registry NumberNot Available
SMILES
CC(C)=CCC\C(C)=C\CC[C@@](C)(C=C)S(=O)(=O)CCNC(N)=N
InChI Identifier
InChI=1S/C18H33N3O2S/c1-6-18(5,24(22,23)14-13-21-17(19)20)12-8-11-16(4)10-7-9-15(2)3/h6,9,11H,1,7-8,10,12-14H2,2-5H3,(H4,19,20,21)/b16-11+/t18-/m1/s1
InChI KeyHTMRIMAGHVWENK-QIPHDZALSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Agelas nakamuraiAnimalia
Agelas sp.Animalia
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentSesquiterpenoids
Alternative Parents
Substituents
  • Farsesane sesquiterpenoid
  • Sesquiterpenoid
  • Sulfonyl
  • Sulfone
  • Guanidine
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboximidamide
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organonitrogen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.49ALOGPS
logP3ChemAxon
logS-4.5ALOGPS
pKa (Strongest Basic)11.94ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area96.04 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity114.2 m³·mol⁻¹ChemAxon
Polarizability41.53 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00011369
Chemspider ID57519910
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound92040889
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Lu IT, Lin SC, Chu YC, Wen Y, Lin YC, Cheng WC, Sheu JH, Lin CC: (-)-Agelasidine A Induces Endoplasmic Reticulum Stress-Dependent Apoptosis in Human Hepatocellular Carcinoma. Mar Drugs. 2022 Jan 29;20(2). pii: md20020109. doi: 10.3390/md20020109. [PubMed:35200638 ]
  2. Khan A, Zhao H, Zhang M, Khan S, Zhao D: Regio- and Enantioselective Synthesis of Sulfone-Bearing Quaternary Carbon Stereocenters by Pd-Catalyzed Allylic Substitution. Angew Chem Int Ed Engl. 2020 Jan 13;59(3):1340-1345. doi: 10.1002/anie.201910378. Epub 2019 Nov 14. [PubMed:31502358 ]
  3. Cai A, Kleij AW: Regio- and Enantioselective Preparation of Chiral Allylic Sulfones Featuring Elusive Quaternary Stereocenters. Angew Chem Int Ed Engl. 2019 Oct 14;58(42):14944-14949. doi: 10.1002/anie.201908318. Epub 2019 Sep 9. [PubMed:31394028 ]
  4. Yang XH, Davison RT, Nie SZ, Cruz FA, McGinnis TM, Dong VM: Catalytic Hydrothiolation: Counterion-Controlled Regioselectivity. J Am Chem Soc. 2019 Feb 20;141(7):3006-3013. doi: 10.1021/jacs.8b11395. Epub 2019 Feb 8. [PubMed:30735362 ]
  5. Medeiros MA, Lourenco A, Tavares MR, Curto MJ, Feio SS, Roseiro JC: (-)-Agelasidine A from Agelas clathrodes. Z Naturforsch C J Biosci. 2006 Jul-Aug;61(7-8):472-6. doi: 10.1515/znc-2006-7-802. [PubMed:16989304 ]