NP-MRD: Showing NP-Card for 19,20-Epoxycytochalasin Q (NP0058050)

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Record Information

Version

2.0

Created at

2022-04-28 03:23:11 UTC

Updated at

2022-04-28 03:23:11 UTC

NP-MRD ID

NP0058050

Secondary Accession Numbers

None

Natural Product Identification

Common Name

19,20-Epoxycytochalasin Q

Description

CHEMBL449278 belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone. 19,20-Epoxycytochalasin Q is found in Xylaria hypoxylon and Xylaria obovata. Based on a literature review very few articles have been published on CHEMBL449278.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282205232D          

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M  END

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  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  3  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 10  1  6  0  0  0
 13 12  1  1  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  1  1  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 26 32  1  6  0  0  0
 25 32  1  6  0  0  0
 24 33  1  6  0  0  0
 24 34  1  1  0  0  0
 21 35  1  1  0  0  0
 16 36  1  6  0  0  0
 15 36  1  0  0  0  0
 15 37  1  1  0  0  0
 14 38  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0058050

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)NC(=O)[C@@]22[C@@H](\C=C\C[C@H](C)C(=O)[C@](C)(O)[C@@H]3O[C@H]3[C@H]2OC(C)=O)[C@@H]2O[C@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H37NO7/c1-15-10-9-13-19-24-29(5,38-24)16(2)21-20(14-18-11-7-6-8-12-18)31-27(34)30(19,21)26(36-17(3)32)22-25(37-22)28(4,35)23(15)33/h6-9,11-13,15-16,19-22,24-26,35H,10,14H2,1-5H3,(H,31,34)/b13-9+/t15-,16-,19-,20-,21-,22+,24-,25+,26+,28-,29+,30-/m0/s1

> <INCHI_KEY>
GSPOYKSHFNFUKI-HDSNRSDKSA-N

> <FORMULA>
C30H37NO7

> <MOLECULAR_WEIGHT>
523.626

> <EXACT_MASS>
523.257002535

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
55.55598999700314

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,3S,5R,6R,8S,10E,12R,13S,15R,16S,17R,18S)-18-benzyl-6-hydroxy-6,8,15,16-tetramethyl-7,20-dioxo-4,14-dioxa-19-azapentacyclo[10.8.0.0^{1,17}.0^{3,5}.0^{13,15}]icos-10-en-2-yl acetate

> <ALOGPS_LOGP>
3.17

> <JCHEM_LOGP>
2.8391079229999967

> <ALOGPS_LOGS>
-4.87

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.156949617098714

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.228775472844783

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3073705135203476

> <JCHEM_POLAR_SURFACE_AREA>
117.76

> <JCHEM_REFRACTIVITY>
137.85959999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.04e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,3S,5R,6R,8S,10E,12R,13S,15R,16S,17R,18S)-18-benzyl-6-hydroxy-6,8,15,16-tetramethyl-7,20-dioxo-4,14-dioxa-19-azapentacyclo[10.8.0.0^{1,17}.0^{3,5}.0^{13,15}]icos-10-en-2-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -0.631  -4.972   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.878  -5.276   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.370  -6.736   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.351  -7.891   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.159  -7.587   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.650  -6.127   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.830  -7.031   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.391  -4.996   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       2.514  -3.730   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       3.446  -2.504   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.981  -0.963   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.900  -3.013   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.762  -4.129   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.547  -5.507   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.377  -3.977   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.143  -3.175   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.250  -2.272   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.727  -3.084   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.240  -2.797   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.981  -4.148   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.925  -5.269   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.815  -6.950   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      10.370  -7.540   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.464  -7.691   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.783  -6.736   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.255  -5.355   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.923  -4.785   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       3.821  -6.042   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.105  -7.680   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       5.550  -8.211   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       2.922  -8.666   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       4.871  -6.031   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       7.995  -9.363   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       7.204  -9.363   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.430  -4.865   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       8.883  -3.871   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       7.984  -5.970   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.643  -7.322   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    7                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    3    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   17   27                                             
CONECT   13   12    8   14                                                  
CONECT   14   13   15   38                                                  
CONECT   15   14   16   36   37                                             
CONECT   16   15   17   36                                                  
CONECT   17   16   12   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   35                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   33   34                                             
CONECT   25   24   26   32                                                  
CONECT   26   25   27   32                                                  
CONECT   27   26   12   28                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32   26   25                                                       
CONECT   33   24                                                            
CONECT   34   24                                                            
CONECT   35   21                                                            
CONECT   36   16   15                                                       
CONECT   37   15                                                            
CONECT   38   14                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   86    0
END

View in JSmol

Synonyms

Value	Source
19,20-Epoxycytochalasin Q	MeSH

Chemical Formula

C₃₀H₃₇NO₇

Average Mass

523.6260 Da

Monoisotopic Mass

523.25700 Da

IUPAC Name

(1R,2S,3S,5R,6R,8S,10E,12R,13S,15R,16S,17R,18S)-18-benzyl-6-hydroxy-6,8,15,16-tetramethyl-7,20-dioxo-4,14-dioxa-19-azapentacyclo[10.8.0.0^{1,17}.0^{3,5}.0^{13,15}]icos-10-en-2-yl acetate

Traditional Name

(1R,2S,3S,5R,6R,8S,10E,12R,13S,15R,16S,17R,18S)-18-benzyl-6-hydroxy-6,8,15,16-tetramethyl-7,20-dioxo-4,14-dioxa-19-azapentacyclo[10.8.0.0^{1,17}.0^{3,5}.0^{13,15}]icos-10-en-2-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)NC(=O)[C@@]22[C@@H](\C=C\C[C@H](C)C(=O)[C@](C)(O)[C@@H]3O[C@H]3[C@H]2OC(C)=O)[C@@H]2O[C@]12C

InChI Identifier

InChI=1S/C30H37NO7/c1-15-10-9-13-19-24-29(5,38-24)16(2)21-20(14-18-11-7-6-8-12-18)31-27(34)30(19,21)26(36-17(3)32)22-25(37-22)28(4,35)23(15)33/h6-9,11-13,15-16,19-22,24-26,35H,10,14H2,1-5H3,(H,31,34)/b13-9+/t15-,16-,19-,20-,21-,22+,24-,25+,26+,28-,29+,30-/m0/s1

InChI Key

GSPOYKSHFNFUKI-HDSNRSDKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xylaria hypoxylon	LOTUS Database	35616633
Xylaria obovata	Fungi	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindolines

Direct Parent

Isoindolones

Alternative Parents

Substituents

Isoindolone
Oxepane
Acyloin
Monocyclic benzene moiety
Benzenoid
2-pyrrolidone
Pyrrolidone
Tertiary alcohol
Pyrrolidine
Carboxamide group
Carboxylic acid ester
Ketone
Lactam
Cyclic ketone
Secondary carboxylic acid amide
Carboxylic acid derivative
Dialkyl ether
Oxirane
Ether
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Alcohol
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Organopnictogen compound
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.17	ALOGPS
logP	2.84	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	12.23	ChemAxon
pKa (Strongest Basic)	-0.31	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	117.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	137.86 m³·mol⁻¹	ChemAxon
Polarizability	55.56 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23327034

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44559501

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 19,20-Epoxycytochalasin Q (NP0058050)

MOL for NP0058050 (19,20-Epoxycytochalasin Q)

3D MOL for NP0058050 (19,20-Epoxycytochalasin Q)

3D SDF for NP0058050 (19,20-Epoxycytochalasin Q)

3D-SDF for NP0058050 (19,20-Epoxycytochalasin Q)

PDB for NP0058050 (19,20-Epoxycytochalasin Q)

3D PDB for NP0058050 (19,20-Epoxycytochalasin Q)

SMILES for NP0058050 (19,20-Epoxycytochalasin Q)

INCHI for NP0058050 (19,20-Epoxycytochalasin Q)

Structure for NP0058050 (19,20-Epoxycytochalasin Q)

3D Structure for NP0058050 (19,20-Epoxycytochalasin Q)