NP-MRD: Showing NP-Card for Diderroside (NP0057638)

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Record Information

Version

2.0

Created at

2022-04-28 03:02:31 UTC

Updated at

2022-04-28 03:02:31 UTC

NP-MRD ID

NP0057638

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Diderroside

Description

2-[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone. Diderroside is found in Calycophyllum spruceanum , Chione venosa, Chione venosa (sw.) Urban var.venosa and Nauclea diderrichii. Based on a literature review very few articles have been published on 2-[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282205022D          

 32 33  0  0  1  0            999 V2000
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8079    0.3412    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  7 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 13 18  1  6  0  0  0
  6 19  1  1  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 20 25  1  0  0  0  0
 25 26  1  6  0  0  0
 24 27  1  1  0  0  0
 23 28  1  1  0  0  0
 22 29  1  6  0  0  0
 29 30  1  0  0  0  0
  1 31  1  0  0  0  0
 31 32  1  0  0  0  0
M  END

     RDKit          3D

 60 61  0  0  0  0  0  0  0  0999 V2000
   -5.2596    4.1533    0.7258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2478    3.2099    0.5035 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4157    2.8225    1.5604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5696    3.3158    2.7103 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3832    1.8402    1.2800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6070    1.4737    2.3130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5894    0.5558    2.2121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3071    0.0204    0.8874 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4357   -1.1526    1.0582 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7542   -0.8882    0.7163 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2869   -1.7057   -0.2512 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4586   -1.1064   -0.7068 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9917   -1.8074   -1.9413 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0300   -1.7490   -2.9767 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4949   -1.1795    0.3787 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6973   -0.6164   -0.0371 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9847   -0.3869    1.5762 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7906    0.9423    1.2601 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6504   -0.9811    1.9668 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7487   -2.3171    2.2791 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5942   -0.1352    0.1976 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6801   -1.0333   -0.9731 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0890   -1.0712   -1.5649 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4169   -2.3589   -0.5525 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4922   -3.1874   -1.1580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2445   -4.5883   -0.6639 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1318   -2.7108   -2.1430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1710    1.2514   -0.0658 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2915    2.1434   -0.8651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8495    3.5139   -1.0676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5968    4.4723   -0.3105 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6882    3.7353   -2.1471 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6335    4.0397    1.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1057    4.0359    0.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8474    5.2027    0.6850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7753    1.9190    3.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3841    0.7742    0.4716 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9163    0.1757    0.3726 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3149   -0.0396   -0.9753 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8888   -1.2964   -2.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2525   -2.8553   -1.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5052   -0.9239   -2.8434 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6242   -2.2234    0.6981 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0133    0.0679    0.6274 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6903   -0.5223    2.4241 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0322    1.5782    1.9588 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1260   -0.3847    2.7352 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7430   -2.9073    1.4931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3250   -0.5477    0.9886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0002   -0.7554   -1.7892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8120   -0.9604   -0.7363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2016   -2.0445   -2.0839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2456   -0.2862   -2.3119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3288   -4.5347    0.4560 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7304   -4.9609   -0.9775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0992   -5.2043   -1.0058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1984    1.1617   -0.5054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849    2.3164   -0.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0906    1.7419   -1.8999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2349    2.9589   -2.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  8 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 21 28  1  0
 28 29  1  0
 29 30  1  0
 30 32  1  0
 30 31  2  0
 28  5  1  0
 19 10  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  6 36  1  0
  8 37  1  6
 10 38  1  6
 12 39  1  6
 13 40  1  0
 13 41  1  0
 14 42  1  0
 15 43  1  1
 16 44  1  0
 17 45  1  1
 18 46  1  0
 19 47  1  1
 20 48  1  0
 21 49  1  1
 22 50  1  6
 23 51  1  0
 23 52  1  0
 23 53  1  0
 26 54  1  0
 26 55  1  0
 26 56  1  0
 28 57  1  6
 29 58  1  0
 29 59  1  0
 32 60  1  0
M  END


  Mrv1652304282205022D          

 32 33  0  0  1  0            999 V2000
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8079    0.3412    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0000   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  7 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 13 18  1  6  0  0  0
  6 19  1  1  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 20 25  1  0  0  0  0
 25 26  1  6  0  0  0
 24 27  1  1  0  0  0
 23 28  1  1  0  0  0
 22 29  1  6  0  0  0
 29 30  1  0  0  0  0
  1 31  1  0  0  0  0
 31 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0057638

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CO[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H]([C@H](C)OC(C)=O)[C@@H]1CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H28O13/c1-7(30-8(2)21)13-9(4-12(22)23)10(17(27)28-3)6-29-18(13)32-19-16(26)15(25)14(24)11(5-20)31-19/h6-7,9,11,13-16,18-20,24-26H,4-5H2,1-3H3,(H,22,23)/t7-,9+,11+,13+,14+,15+,16-,18-,19-/m0/s1

> <INCHI_KEY>
OPKOYMHTMXJHRG-YCXKLPKRSA-N

> <FORMULA>
C19H28O13

> <MOLECULAR_WEIGHT>
464.42

> <EXACT_MASS>
464.152990962

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
43.89577564861205

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid

> <ALOGPS_LOGP>
-1.36

> <JCHEM_LOGP>
-1.9898146566666666

> <ALOGPS_LOGS>
-1.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.20702997774609

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8290839554466456

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981084760188039

> <JCHEM_POLAR_SURFACE_AREA>
198.50999999999996

> <JCHEM_REFRACTIVITY>
99.93909999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.29e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.000  -4.620   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -5.335   0.000   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -3.375   0.637   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.334  -6.930   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.334  -6.930   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.334 -10.010   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.000  -9.240   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.334 -10.010   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       1.334 -11.550   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       0.000  -0.000   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2    3   31                                                  
CONECT    2    1                                                            
CONECT    3    1    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   19                                                  
CONECT    7    6    8   13                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    7   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   13                                                            
CONECT   19    6   20                                                       
CONECT   20   19   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   29                                                  
CONECT   23   22   24   28                                                  
CONECT   24   23   25   27                                                  
CONECT   25   24   20   26                                                  
CONECT   26   25                                                            
CONECT   27   24                                                            
CONECT   28   23                                                            
CONECT   29   22   30                                                       
CONECT   30   29                                                            
CONECT   31    1   32                                                       
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

View in JSmol

Synonyms

Value	Source
2-[(2S,3S,4S)-3-[(1S)-1-(Acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetate	Generator

Chemical Formula

C₁₉H₂₈O₁₃

Average Mass

464.4200 Da

Monoisotopic Mass

464.15299 Da

IUPAC Name

2-[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid

Traditional Name

[(2S,3S,4S)-3-[(1S)-1-(acetyloxy)ethyl]-5-(methoxycarbonyl)-2-{[(2S,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-4-yl]acetic acid

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CO[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@@H](O)[C@@H]2O)[C@H]([C@H](C)OC(C)=O)[C@@H]1CC(O)=O

InChI Identifier

InChI=1S/C19H28O13/c1-7(30-8(2)21)13-9(4-12(22)23)10(17(27)28-3)6-29-18(13)32-19-16(26)15(25)14(24)11(5-20)31-19/h6-7,9,11,13-16,18-20,24-26H,4-5H2,1-3H3,(H,22,23)/t7-,9+,11+,13+,14+,15+,16-,18-,19-/m0/s1

InChI Key

OPKOYMHTMXJHRG-YCXKLPKRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Calycophyllum spruceanum	Plant	KNApSAcK
Chione venosa	LOTUS Database	35616633
Chione venosa (sw.) Urban var.venosa	Plant	KNApSAcK
Nauclea diderrichii	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Terpene glycosides

Alternative Parents

Substituents

Terpene glycoside
O-glycosyl compound
Secoiridoid-skeleton
Glycosyl compound
Monoterpenoid
Monocyclic monoterpenoid
Tricarboxylic acid or derivatives
Oxane
Monosaccharide
Vinylogous ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Secondary alcohol
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Carboxylic acid
Carboxylic acid derivative
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.4	ALOGPS
logP	-2	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	3.83	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	198.51 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	99.94 m³·mol⁻¹	ChemAxon
Polarizability	43.9 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162949268

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Diderroside (NP0057638)

MOL for NP0057638 (Diderroside)

3D MOL for NP0057638 (Diderroside)

3D SDF for NP0057638 (Diderroside)

3D-SDF for NP0057638 (Diderroside)

PDB for NP0057638 (Diderroside)

3D PDB for NP0057638 (Diderroside)

SMILES for NP0057638 (Diderroside)

INCHI for NP0057638 (Diderroside)

Structure for NP0057638 (Diderroside)

3D Structure for NP0057638 (Diderroside)