NP-MRD: Showing NP-Card for 6a,13a-Didehydropachyrrhizone (NP0056670)

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Record Information

Version

2.0

Created at

2022-04-28 02:21:53 UTC

Updated at

2022-04-28 02:21:54 UTC

NP-MRD ID

NP0056670

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6a,13a-Didehydropachyrrhizone

Description

Dehydropachyrrhizone belongs to the class of organic compounds known as rotenones. These are rotenoids with a structure based on a 6a,12a-dihydrochromeno[3,4-b]chromen-12(6H)-one skeleton. Thus, dehydropachyrrhizone is considered to be a flavonoid lipid molecule. 6a,13a-Didehydropachyrrhizone is found in Pachyrrhizus erosus . Dehydropachyrrhizone is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241502062D          

 27 32  0  0  0  0            999 V2000
    6.3378    3.6427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5187    3.5440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1946    2.7854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3755    2.6867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8806    3.3468    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0615    3.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7374    2.4895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2323    1.8294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9082    1.0708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0514    1.9281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5464    1.2680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3654    1.3667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9868    0.8240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6950    1.2472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5113    2.0515    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6896    2.1253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9183    2.3908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5941    1.6322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7751    1.5336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3003    0.8589    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4881    1.1019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5006    1.9268    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2801    2.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042    2.9522    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4233    3.0509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7474    3.8095    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5665    3.9082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  3 16  2  0  0  0  0
 12 16  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 17 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
  6 27  1  0  0  0  0
M  END

     RDKit          3D

 39 44  0  0  0  0  0  0  0  0999 V2000
   -4.5395    2.1699    0.2169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0928    1.2214   -0.7290 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3586    0.0932   -0.3689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0339   -1.0690   -0.0567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2999   -1.4020   -0.0113 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4515   -2.6461    0.3463 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1919   -3.1711    0.5516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2755   -2.1681    0.2959 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8845   -2.1027    0.3339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2274   -0.9331    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1713   -0.8899    0.0636 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7540   -1.9220    0.3894 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7947    0.2719   -0.2506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0257    1.3431   -0.5976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3346    1.2743   -0.6312 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9544    0.1633   -0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5995    2.6304   -0.9484 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9766    2.6281   -0.8912 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8137    1.5891   -0.5529 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1858    1.7314   -0.5382 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9867    0.6667   -0.1939 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4022   -0.5440    0.1362 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0372   -0.7080    0.1281 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2504    0.3606   -0.2167 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4549   -1.3916    0.4274 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6251   -0.6341    0.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3664    0.5308   -0.0974 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4585    3.2141   -0.1526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9296    2.0151    1.1384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5977    2.0095    0.5051 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4174   -3.1368    0.4502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9453   -4.1678    0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3054   -2.9510    0.6058 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3052    2.8922   -2.0032 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1162    3.4046   -0.3114 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6214    2.7050   -0.8050 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6620   -1.6526    0.3890 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5440   -1.1460    0.4038 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6568   -0.2784    1.7437 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 16  2  0
 16 15  1  0
 15 14  1  0
 14 13  2  0
 13 11  1  0
 11 12  2  0
 13 24  1  0
 24 23  2  0
 23 22  1  0
 22 21  2  0
 21 27  1  0
 27 26  1  0
 26 25  1  0
 21 20  1  0
 20 19  2  0
 19 18  1  0
 18 17  1  0
 16  3  1  0
 17 14  1  0
  8  4  1  0
 11 10  1  0
 19 24  1  0
 25 22  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  6 31  1  0
  7 32  1  0
  9 33  1  0
 23 37  1  0
 26 38  1  0
 26 39  1  0
 20 36  1  0
 17 34  1  0
 17 35  1  0
M  END


  Mrv1533004241502062D          

 27 32  0  0  0  0            999 V2000
    6.3378    3.6427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5187    3.5440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1946    2.7854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3755    2.6867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8806    3.3468    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0615    3.2481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7374    2.4895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2323    1.8294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9082    1.0708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0514    1.9281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5464    1.2680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3654    1.3667    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9868    0.8240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6950    1.2472    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5113    2.0515    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6896    2.1253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9183    2.3908    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5941    1.6322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7751    1.5336    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3003    0.8589    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4881    1.1019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5006    1.9268    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2801    2.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042    2.9522    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4233    3.0509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7474    3.8095    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5665    3.9082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  4 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
  3 16  2  0  0  0  0
 12 16  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 17 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
  6 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0056670

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2OC=CC2=CC2=C1OC1=C(C2=O)C2=CC3=C(OCO3)C=C2OC1

> <INCHI_IDENTIFIER>
InChI=1S/C20H12O7/c1-22-20-18-9(2-3-23-18)4-11-17(21)16-10-5-13-14(26-8-25-13)6-12(10)24-7-15(16)27-19(11)20/h2-6H,7-8H2,1H3

> <INCHI_KEY>
MSXPSNDSSMJJME-UHFFFAOYSA-N

> <FORMULA>
C20H12O7

> <MOLECULAR_WEIGHT>
364.309

> <EXACT_MASS>
364.058302726

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
36.4979113305871

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
16-methoxy-5,7,11,14,18-pentaoxahexacyclo[11.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁷,²¹]tetracosa-1(13),2,4(8),9,15(23),16,19,21-octaen-24-one

> <ALOGPS_LOGP>
2.81

> <JCHEM_LOGP>
2.4783225036666665

> <ALOGPS_LOGS>
-3.16

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.905900663474526

> <JCHEM_POLAR_SURFACE_AREA>
76.36000000000001

> <JCHEM_REFRACTIVITY>
92.37610000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.51e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
dehydropachyrrhizone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      11.831   6.800   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      10.302   6.616   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       9.697   5.199   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.168   5.015   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       7.244   6.247   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       5.715   6.063   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.110   4.647   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.034   3.415   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.429   1.999   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.563   3.599   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.487   2.367   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.015   2.551   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.175   1.538   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.497   2.328   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      12.154   3.829   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.621   3.967   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.581   4.463   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.976   3.047   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.447   2.863   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.561   1.603   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.911   2.057   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.934   3.597   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.523   4.095   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.128   5.511   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.657   5.695   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       3.262   7.111   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.791   7.295   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   16                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8   17                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8    4   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    3   12                                                  
CONECT   17    7   18   25                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   23                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   19   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   17   26                                                  
CONECT   26   25   27                                                       
CONECT   27   26    6                                                       
MASTER        0    0    0    0    0    0    0    0   27    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₁₂O₇

Average Mass

364.3090 Da

Monoisotopic Mass

364.05830 Da

IUPAC Name

16-methoxy-5,7,11,14,18-pentaoxahexacyclo[11.11.0.0²,¹⁰.0⁴,⁸.0¹⁵,²³.0¹⁷,²¹]tetracosa-1(13),2,4(8),9,15(23),16,19,21-octaen-24-one

Traditional Name

dehydropachyrrhizone

CAS Registry Number

Not Available

SMILES

COC1=C2OC=CC2=CC2=C1OC1=C(C2=O)C2=CC3=C(OCO3)C=C2OC1

InChI Identifier

InChI=1S/C20H12O7/c1-22-20-18-9(2-3-23-18)4-11-17(21)16-10-5-13-14(26-8-25-13)6-12(10)24-7-15(16)27-19(11)20/h2-6H,7-8H2,1H3

InChI Key

MSXPSNDSSMJJME-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pachyrrhizus erosus	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as rotenones. These are rotenoids with a structure based on a 6a,12a-dihydrochromeno[3,4-b]chromen-12(6H)-one skeleton.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Rotenoids

Direct Parent

Rotenones

Alternative Parents

Substituents

Rotenone or derivatives
Isoflavone
Furanochromone
Chromone
Benzopyran
1-benzopyran
Benzodioxole
Benzofuran
Anisole
Alkyl aryl ether
Pyranone
Benzenoid
Pyran
Heteroaromatic compound
Furan
Acetal
Oxacycle
Organoheterocyclic compound
Ether
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Rotenoid flavonoids (LMPK12060061 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.81	ALOGPS
logP	2.48	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	76.36 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	92.38 m³·mol⁻¹	ChemAxon
Polarizability	36.5 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 6a,13a-Didehydropachyrrhizone (NP0056670)

MOL for NP0056670 (6a,13a-Didehydropachyrrhizone)

3D MOL for NP0056670 (6a,13a-Didehydropachyrrhizone)

3D SDF for NP0056670 (6a,13a-Didehydropachyrrhizone)

3D-SDF for NP0056670 (6a,13a-Didehydropachyrrhizone)

PDB for NP0056670 (6a,13a-Didehydropachyrrhizone)

3D PDB for NP0056670 (6a,13a-Didehydropachyrrhizone)

SMILES for NP0056670 (6a,13a-Didehydropachyrrhizone)

INCHI for NP0056670 (6a,13a-Didehydropachyrrhizone)

Structure for NP0056670 (6a,13a-Didehydropachyrrhizone)

3D Structure for NP0056670 (6a,13a-Didehydropachyrrhizone)