NP-MRD: Showing NP-Card for Dalpatein (NP0056518)

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Record Information

Version

2.0

Created at

2022-04-28 02:16:35 UTC

Updated at

2022-04-28 02:16:35 UTC

NP-MRD ID

NP0056518

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dalpatein

Description

Dalpatein belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom. Dalpatein is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Dalpatein is found in Dalbergia lanceolaria, Dalbergia paniculata , Millettia pachyloba, Piscidia erythrina and Piscidia piscipula. An methoxyisoflavone having methoxy substituents at the 6- and 2'-positions, a hydroxy group at position 7 and a methylenedioxy moiety at the 4'- and 5'-positions.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 42  0  0  0  0  0  0  0  0999 V2000
    5.1668   -1.6331    1.8053 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4179   -0.7009    0.7822 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3400   -0.0607    0.1864 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0318   -0.3074    0.5677 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9771    0.3473   -0.0476 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6894    0.0777    0.3567 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4173   -0.7348    1.2584 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3597    0.7275   -0.2526 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7441    0.5218    0.0878 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5226    1.4883    0.6940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8441    1.2536    1.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4212    0.0356    0.7443 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6578   -0.9477    0.1359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3166   -0.7019   -0.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5166   -1.6583   -0.8023 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1230   -2.9056   -1.0788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7434    0.0855    1.1804 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0562    1.4503    1.3461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8046    2.0401    1.6174 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0549    1.6337   -1.2580 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1894    1.8566   -1.6077 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2219    1.2658   -1.0611 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5295    1.4855   -1.4126 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5866    0.8612   -0.8311 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9037    1.0871   -1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3615   -2.3128    1.4621 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8993   -1.1878    2.7782 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0768   -2.2901    1.9292 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8124   -1.0265    1.3640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0661    2.4641    0.9177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0820   -1.9267   -0.0982 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4161   -3.6564   -1.4642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6219   -3.3377   -0.1618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9390   -2.8108   -1.8304 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7327    1.5139    2.2475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5576    1.8955    0.4572 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8868    2.1617   -1.7544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7159    2.2029   -2.2019 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1297    1.7435   -1.9210 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5 22  2  0
 22 21  1  0
 21 20  1  0
 20  8  2  0
  8  6  1  0
  6  7  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 17  1  0
 17 18  1  0
 18 19  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 22 23  1  0
 23 24  2  0
 24 25  1  0
 24  3  1  0
  6  5  1  0
 14  9  1  0
 19 11  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  4 29  1  0
 20 37  1  0
 10 30  1  0
 18 35  1  0
 18 36  1  0
 13 31  1  0
 16 32  1  0
 16 33  1  0
 16 34  1  0
 23 38  1  0
 25 39  1  0
M  END


  Mrv1533004251513422D          

 25 28  0  0  0  0            999 V2000
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9280    0.9826    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4130    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9280    2.3174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  5 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 17 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0056518

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(OC=C(C2=O)C2=CC3=C(OCO3)C=C2OC)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H14O7/c1-21-13-6-17-16(24-8-25-17)3-9(13)11-7-23-14-5-12(19)15(22-2)4-10(14)18(11)20/h3-7,19H,8H2,1-2H3

> <INCHI_KEY>
GYUPEJCNVAKZSU-UHFFFAOYSA-N

> <FORMULA>
C18H14O7

> <MOLECULAR_WEIGHT>
342.303

> <EXACT_MASS>
342.073952791

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
33.9266824175565

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-hydroxy-6-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-4H-chromen-4-one

> <ALOGPS_LOGP>
2.57

> <JCHEM_LOGP>
2.3418939693333334

> <ALOGPS_LOGS>
-3.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.9178386383329356

> <JCHEM_PKA_STRONGEST_BASIC>
-4.303922173963376

> <JCHEM_POLAR_SURFACE_AREA>
83.45000000000002

> <JCHEM_REFRACTIVITY>
86.4144

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.08e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
dalpatein

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -5.466   1.834   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -6.371   3.080   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -5.466   4.326   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.001   3.850   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.000   4.620   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   15                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    5   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12    3   14                                                  
CONECT   14   13                                                            
CONECT   15    8   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   21                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   17   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22   15   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   56    0
END

View in JSmol

Synonyms

Value	Source
6,2'-Dimethoxy-4',5'-methylenedioxyisoflavone	MetaCyc

Chemical Formula

C₁₈H₁₄O₇

Average Mass

342.3030 Da

Monoisotopic Mass

342.07395 Da

IUPAC Name

7-hydroxy-6-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-4H-chromen-4-one

Traditional Name

dalpatein

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(OC=C(C2=O)C2=CC3=C(OCO3)C=C2OC)C=C1O

InChI Identifier

InChI=1S/C18H14O7/c1-21-13-6-17-16(24-8-25-17)3-9(13)11-7-23-14-5-12(19)15(22-2)4-10(14)18(11)20/h3-7,19H,8H2,1-2H3

InChI Key

GYUPEJCNVAKZSU-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dalbergia lanceolaria	LOTUS Database	35616633
Dalbergia paniculata	Plant	KNApSAcK
Millettia pachyloba	Plant	KNApSAcK
Piscidia erythrina	Plant	KNApSAcK
Piscidia piscipula	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoflavones. These are polycyclic compounds containing a 2-isoflavene skeleton which bears a ketone group at the C4 carbon atom.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Isoflav-2-enes

Direct Parent

Isoflavones

Alternative Parents

Substituents

Hydroxyisoflavonoid
Isoflavone
Chromone
Benzopyran
1-benzopyran
Benzodioxole
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Pyranone
Benzenoid
Pyran
Heteroaromatic compound
Organoheterocyclic compound
Ether
Oxacycle
Acetal
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

benzodioxoles (CHEBI:55549 )
ring assembly (CHEBI:55549 )
methoxyisoflavone (CHEBI:55549 )
7-hydroxyisoflavones (CHEBI:55549 )
Isoflavonoids (LMPK12050124 )
an isoflavone (CPD-9710 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.57	ALOGPS
logP	2.34	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	6.92	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	83.45 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	86.41 m³·mol⁻¹	ChemAxon
Polarizability	33.93 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

CPD-9710

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25203443

PDB ID

Not Available

ChEBI ID

55549

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Dalpatein (NP0056518)

MOL for NP0056518 (Dalpatein)

3D MOL for NP0056518 (Dalpatein)

3D SDF for NP0056518 (Dalpatein)

3D-SDF for NP0056518 (Dalpatein)

PDB for NP0056518 (Dalpatein)

3D PDB for NP0056518 (Dalpatein)

SMILES for NP0056518 (Dalpatein)

INCHI for NP0056518 (Dalpatein)

Structure for NP0056518 (Dalpatein)

3D Structure for NP0056518 (Dalpatein)