NP-MRD: Showing NP-Card for Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol (NP0056348)

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Record Information

Version

2.0

Created at

2022-04-28 02:09:24 UTC

Updated at

2022-04-28 02:09:24 UTC

NP-MRD ID

NP0056348

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol

Description

Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol is found in Robinia pseudoacacia . Based on a literature review very few articles have been published on (2R,3S,4S)-2-{2-[(2R,3S,4S)-3,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4,5-trihydroxyphenyl}-3,4-dihydro-2H-1-benzopyran-3,4,7-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282204092D          

 43 48  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652304282204092D          

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   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  5 10  1  0  0  0  0
  9 11  1  0  0  0  0
  3 12  1  6  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 12 17  1  0  0  0  0
 16 18  1  0  0  0  0
 15 19  1  0  0  0  0
 14 20  1  0  0  0  0
  2 21  1  1  0  0  0
  1 22  1  6  0  0  0
 22 23  2  0  0  0  0
 24 23  1  1  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 24 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 27 33  1  0  0  0  0
 31 34  1  0  0  0  0
 26 35  1  6  0  0  0
 25 36  1  6  0  0  0
 23 37  1  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 22 40  1  0  0  0  0
 40 41  1  0  0  0  0
 39 42  1  0  0  0  0
 38 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0056348

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H]1[C@@H](O)C2=C(O[C@@H]1C1=C([C@H]3[C@H](O)[C@H](OC4=C3C=CC(O)=C4)C3=CC(O)=C(O)C(O)=C3)C(O)=C(O)C(O)=C1)C=C(O)C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C30H26O13/c31-11-1-3-13-19(7-11)42-29(10-5-16(33)24(37)17(34)6-10)27(40)21(13)22-15(9-18(35)25(38)26(22)39)30-28(41)23(36)14-4-2-12(32)8-20(14)43-30/h1-9,21,23,27-41H/t21-,23-,27-,28-,29+,30+/m0/s1

> <INCHI_KEY>
JCTRYQPQWQYQGS-IROZXAIOSA-N

> <FORMULA>
C30H26O13

> <MOLECULAR_WEIGHT>
594.525

> <EXACT_MASS>
594.137340897

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
58.494338665872164

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S)-2-{2-[(2R,3S,4S)-3,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4,5-trihydroxyphenyl}-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

> <ALOGPS_LOGP>
2.08

> <JCHEM_LOGP>
2.196748866666667

> <ALOGPS_LOGS>
-3.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.918319821101397

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.435807605149254

> <JCHEM_PKA_STRONGEST_BASIC>
-5.703100559744331

> <JCHEM_POLAR_SURFACE_AREA>
240.98999999999995

> <JCHEM_REFRACTIVITY>
147.7155

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.38e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S)-2-{2-[(2R,3S,4S)-3,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4,5-trihydroxyphenyl}-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.637   2.684   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.131   2.364   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.900   3.509   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.424   4.973   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.082   5.294   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.113   4.149   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.619   4.469   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.095   5.934   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.065   7.078   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.558   6.758   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -3.540   8.543   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.406   3.189   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.437   4.333   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.943   4.013   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.419   2.548   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.388   1.404   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.882   1.724   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.864  -0.061   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       6.925   2.228   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       5.974   5.157   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       0.345   0.900   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.000  -0.000   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       5.533  -0.931   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       0.000  -4.620   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      -2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -5.335   0.000   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      -4.001   3.850   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0      -6.668   2.310   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0      -6.668  -0.770   0.000  0.00  0.00           O+0
CONECT    1    2    6   22                                                  
CONECT    2    1    3   21                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9    5                                                       
CONECT   11    9                                                            
CONECT   12    3   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   20                                                  
CONECT   15   14   16   19                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   12                                                       
CONECT   18   16                                                            
CONECT   19   15                                                            
CONECT   20   14                                                            
CONECT   21    2                                                            
CONECT   22    1   23   40                                                  
CONECT   23   22   24   37                                                  
CONECT   24   23   25   29                                                  
CONECT   25   24   26   36                                                  
CONECT   26   25   27   35                                                  
CONECT   27   26   28   33                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28   24                                                       
CONECT   30   28   31                                                       
CONECT   31   30   32   34                                                  
CONECT   32   31   33                                                       
CONECT   33   32   27                                                       
CONECT   34   31                                                            
CONECT   35   26                                                            
CONECT   36   25                                                            
CONECT   37   23   38                                                       
CONECT   38   37   39   43                                                  
CONECT   39   38   40   42                                                  
CONECT   40   39   22   41                                                  
CONECT   41   40                                                            
CONECT   42   39                                                            
CONECT   43   38                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   96    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₂₆O₁₃

Average Mass

594.5250 Da

Monoisotopic Mass

594.13734 Da

IUPAC Name

(2R,3S,4S)-2-{2-[(2R,3S,4S)-3,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4,5-trihydroxyphenyl}-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

Traditional Name

(2R,3S,4S)-2-{2-[(2R,3S,4S)-3,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-yl]-3,4,5-trihydroxyphenyl}-3,4-dihydro-2H-1-benzopyran-3,4,7-triol

CAS Registry Number

Not Available

SMILES

O[C@H]1[C@@H](O)C2=C(O[C@@H]1C1=C([C@H]3[C@H](O)[C@H](OC4=C3C=CC(O)=C4)C3=CC(O)=C(O)C(O)=C3)C(O)=C(O)C(O)=C1)C=C(O)C=C2

InChI Identifier

InChI=1S/C30H26O13/c31-11-1-3-13-19(7-11)42-29(10-5-16(33)24(37)17(34)6-10)27(40)21(13)22-15(9-18(35)25(38)26(22)39)30-28(41)23(36)14-4-2-12(32)8-20(14)43-30/h1-9,21,23,27-41H/t21-,23-,27-,28-,29+,30+/m0/s1

InChI Key

JCTRYQPQWQYQGS-IROZXAIOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Robinia pseudoacacia	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.08	ALOGPS
logP	2.2	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	8.44	ChemAxon
pKa (Strongest Basic)	-5.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	240.99 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	147.72 m³·mol⁻¹	ChemAxon
Polarizability	58.49 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162935370

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol (NP0056348)

MOL for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

3D MOL for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

3D SDF for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

3D-SDF for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

PDB for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

3D PDB for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

SMILES for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

INCHI for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

Structure for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)

3D Structure for NP0056348 (Robinetinidol-(4alpha->2')-robinetinidol-4beta-ol)