NP-MRD: Showing NP-Card for Castillene B (NP0055426)

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Record Information

Version

2.0

Created at

2022-04-28 01:29:02 UTC

Updated at

2022-04-28 01:29:02 UTC

NP-MRD ID

NP0055426

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Castillene B

Description

(4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0²,⁶]Dodeca-1(9),2(6),7,11-tetraene belongs to the class of organic compounds known as benzofurans. These are organic compounds containing a benzene ring fused to a furan. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. Castillene B is found in Lonchocarpus castilloi. Based on a literature review very few articles have been published on (4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0²,⁶]Dodeca-1(9),2(6),7,11-tetraene.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 44  0  0  0  0  0  0  0  0999 V2000
   -0.9469   -3.6566   -0.1858 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8004   -2.3477   -0.5273 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0990   -1.4109    0.4404 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1016   -0.4210    0.0075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4344   -0.5359   -0.4030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1780    0.5644   -0.7664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6068    1.8312   -0.7311 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0724    3.0337   -1.0179 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1655    3.9583   -0.8363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0340    3.3141   -0.4022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3061    1.9639   -0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5661    0.8336    0.0330 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2675    0.7973    0.4500 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1243   -0.5575    0.6561 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1434   -0.8181   -0.4617 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3269    0.0219   -0.3125 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2218    1.3217   -0.8195 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2943    2.1706   -0.7431 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4596    1.7314   -0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5613    0.4544    0.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4770   -0.4330    0.2618 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339   -0.6328    1.9130 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0566   -1.8351    2.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3565   -4.0397    0.6401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6327   -4.2552   -1.0920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0384   -3.8655   -0.0928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4218   -1.8626    1.3986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9093   -1.5026   -0.4424 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2183    0.4947   -1.0891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3254    5.0276   -1.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0925    3.7765   -0.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6180   -0.5940   -1.4094 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3648   -1.9050   -0.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3079    1.6433   -1.2621 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1696    3.1737   -1.1499 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2963    2.4200   -0.1177 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4707    0.0833    0.7878 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6103   -1.4332    0.6528 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1778   -2.5279    2.4038 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8874   -2.2938    1.8418 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3718   -1.6874    3.4568 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 14 22  1  1
 22 23  1  0
 14  3  1  0
 21 16  1  0
 12  4  1  0
 11  7  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  1
  5 28  1  0
  6 29  1  0
  9 30  1  0
 10 31  1  0
 15 32  1  0
 15 33  1  0
 17 34  1  0
 18 35  1  0
 19 36  1  0
 20 37  1  0
 21 38  1  0
 23 39  1  0
 23 40  1  0
 23 41  1  0
M  END


  Mrv1652304282203292D          

 23 26  0  0  1  0            999 V2000
    2.0088    2.1641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5963    1.4496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7713    1.4496    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3588    2.1641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7713    2.8785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5963    2.8785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4482    1.9925    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5344    1.1720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2193    0.8365    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1483    0.8365    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9020    1.1720    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8158    1.9925    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4289    2.5446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2573    3.3515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3220    0.4619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9170   -0.2568    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3369   -0.9669    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9319   -1.6857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1070   -1.6943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6870   -0.9842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0920   -0.2655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7270    1.1634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1469    1.8735    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  1  6  2  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  3  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  1 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 11 15  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 11 22  1  6  0  0  0
 22 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0055426

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@H]1C2=CC=C3OC=CC3=C2O[C@@]1(CC1=CC=CC=C1)OC

> <INCHI_IDENTIFIER>
InChI=1S/C19H18O4/c1-20-18-15-8-9-16-14(10-11-22-16)17(15)23-19(18,21-2)12-13-6-4-3-5-7-13/h3-11,18H,12H2,1-2H3/t18-,19-/m1/s1

> <INCHI_KEY>
SROUQLDEOKTEER-RTBURBONSA-N

> <FORMULA>
C19H18O4

> <MOLECULAR_WEIGHT>
310.349

> <EXACT_MASS>
310.12050906

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
33.24329404318649

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0^{2,6}]dodeca-1,6,8,11-tetraene

> <ALOGPS_LOGP>
3.86

> <JCHEM_LOGP>
4.036359202333333

> <ALOGPS_LOGS>
-4.20

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.834372136138247

> <JCHEM_POLAR_SURFACE_AREA>
40.83

> <JCHEM_REFRACTIVITY>
85.99730000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.97e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0^{2,6}]dodeca-1,6,8,11-tetraene

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       3.750   4.040   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.980   2.706   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.440   2.706   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.670   4.040   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.440   5.373   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.980   5.373   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.837   3.719   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.998   2.188   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.409   1.561   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       4.010   1.561   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       5.417   2.188   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.256   3.719   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.401   4.750   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       6.080   6.256   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.201   0.862   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.445  -0.479   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.229  -1.805   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.473  -3.147   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.933  -3.163   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.149  -1.837   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.905  -0.496   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       6.957   2.172   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       7.741   3.497   0.000  0.00  0.00           C+0
CONECT    1    2    6   12                                                  
CONECT    2    1    3   10                                                  
CONECT    3    2    4    9                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    4    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    3                                                       
CONECT   10    2   11                                                       
CONECT   11   10   12   15   22                                             
CONECT   12   11    1   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   11   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16                                                       
CONECT   22   11   23                                                       
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₁₈O₄

Average Mass

310.3490 Da

Monoisotopic Mass

310.12051 Da

IUPAC Name

(4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0^{2,6}]dodeca-1,6,8,11-tetraene

Traditional Name

(4R,5R)-4-benzyl-4,5-dimethoxy-3,10-dioxatricyclo[7.3.0.0^{2,6}]dodeca-1,6,8,11-tetraene

CAS Registry Number

Not Available

SMILES

CO[C@@H]1C2=CC=C3OC=CC3=C2O[C@@]1(CC1=CC=CC=C1)OC

InChI Identifier

InChI=1S/C19H18O4/c1-20-18-15-8-9-16-14(10-11-22-16)17(15)23-19(18,21-2)12-13-6-4-3-5-7-13/h3-11,18H,12H2,1-2H3/t18-,19-/m1/s1

InChI Key

SROUQLDEOKTEER-RTBURBONSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lonchocarpus castilloi	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzofurans. These are organic compounds containing a benzene ring fused to a furan. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzofurans

Sub Class

Not Available

Direct Parent

Benzofurans

Alternative Parents

Substituents

Coumaran
Benzofuran
Ketal
Benzenoid
Monocyclic benzene moiety
Heteroaromatic compound
Furan
Oxacycle
Ether
Dialkyl ether
Acetal
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.86	ALOGPS
logP	4.04	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	40.83 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	86 m³·mol⁻¹	ChemAxon
Polarizability	33.24 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162917671

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Castillene B (NP0055426)

MOL for NP0055426 (Castillene B)

3D MOL for NP0055426 (Castillene B)

3D SDF for NP0055426 (Castillene B)

3D-SDF for NP0055426 (Castillene B)

PDB for NP0055426 (Castillene B)

3D PDB for NP0055426 (Castillene B)

SMILES for NP0055426 (Castillene B)

INCHI for NP0055426 (Castillene B)

Structure for NP0055426 (Castillene B)

3D Structure for NP0055426 (Castillene B)