NP-MRD: Showing NP-Card for alpha-Isosparteine (NP0055086)

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Record Information

Version

2.0

Created at

2022-04-28 01:13:58 UTC

Updated at

2022-04-28 01:13:58 UTC

NP-MRD ID

NP0055086

Secondary Accession Numbers

None

Natural Product Identification

Common Name

alpha-Isosparteine

Description

Genisteine belongs to the class of organic compounds known as sparteine, lupanine, and related alkaloids. These are alkaloids with a structure based on either sparteine, lupanine, or derivatives thereof. These are tetracyclic compounds made of two fused quinolizidine ring systems. alpha-Isosparteine is found in Camaecytisus absinthioides, Cytisophyllum sessilifolium, Cytisus scoparius , Genista aucheri, Haplormosia monophylla, Hasperolaburnum platycarpum, Hesperolaburnum platycarpum, Lupinus excubitus, Rothia indica and Rothia trifoliata. alpha-Isosparteine was first documented in 2014 (PMID: 24497113). Based on a literature review very few articles have been published on Genisteine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 46  0  0  0  0  0  0  0  0999 V2000
   -3.8498   -0.2072    0.6459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0518    1.0799   -0.0662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9039    1.5282   -0.9217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7410    0.8905   -0.6394 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4852    1.5265   -0.5852 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4854    1.0980    0.5367 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3510   -0.0525    1.0916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4291   -0.8514   -0.2267 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5192   -1.8802   -0.0201 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7208   -1.1034    0.4080 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9222   -1.6751   -0.0470 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8672   -0.7494   -0.7433 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1305    0.5099    0.0396 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8775    0.8942    0.8016 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6779    0.3054    0.0173 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7489   -0.5878   -0.7033 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8918   -1.1617    0.0859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6250   -0.0386    1.7425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8649   -0.7111    0.6853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9819    1.1017   -0.6776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2319    1.8712    0.7228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1937    1.3589   -2.0028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7954    2.6144   -0.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7184    2.6045   -0.3248 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0575    1.6135   -1.5598 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7116    1.8669    1.2430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2876    0.3848    1.4156 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1161   -0.5605    1.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1237   -0.3684   -1.1175 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8756   -2.5021   -0.8480 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2773   -2.5010    0.8863 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7139   -2.5254   -0.7273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4839   -2.1242    0.8177 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8350   -1.3156   -0.8754 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5397   -0.5157   -1.7833 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3894    1.3002   -0.7144 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0125    0.4291    0.7006 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8062    2.0022    0.7888 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8859    0.4649    1.8169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9386    0.4973   -1.0186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9754   -0.7942   -1.7782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4232   -1.9652   -0.5094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4179   -1.7516    0.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
  8 16  1  0
 16 17  1  0
 17  1  1  0
 16  4  1  0
 15  6  1  0
 15 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  1
  7 27  1  0
  7 28  1  0
  8 29  1  6
  9 30  1  0
  9 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 14 39  1  0
 15 40  1  6
 16 41  1  6
 17 42  1  0
 17 43  1  0
M  END


  Mrv1652304282203132D          

 17 20  0  0  1  0            999 V2000
    6.3404    2.0344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3404    1.2094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6259    0.7969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9114    1.2094    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9114    2.0344    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6259    2.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3281    2.6178    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1646    1.5188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5031    0.6260    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3281    0.6260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9197    1.2094    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9197    2.0344    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5031    2.6178    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2053    2.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4908    2.0344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4908    1.2094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2053    0.7969    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
  4 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 11 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0055086

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1CCN2C[C@H]3C[C@@H](CN4CCCC[C@H]34)[C@H]2C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H26N2/c1-3-7-16-11-13-9-12(14(16)5-1)10-17-8-4-2-6-15(13)17/h12-15H,1-11H2/t12-,13+,14-,15-/m1/s1

> <INCHI_KEY>
SLRCCWJSBJZJBV-LXTVHRRPSA-N

> <FORMULA>
C15H26N2

> <MOLECULAR_WEIGHT>
234.387

> <EXACT_MASS>
234.209598845

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
25.34519252393182

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,9S,10R)-7,15-diazatetracyclo[7.7.1.0^{2,7}.0^{10,15}]heptadecane

> <ALOGPS_LOGP>
2.98

> <JCHEM_LOGP>
2.027827476999999

> <ALOGPS_LOGS>
-2.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA_STRONGEST_BASIC>
9.16023077227616

> <JCHEM_POLAR_SURFACE_AREA>
6.48

> <JCHEM_REFRACTIVITY>
71.82300000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.31e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,9S,10R)-7,15-diazatetracyclo[7.7.1.0^{2,7}.0^{10,15}]heptadecane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      11.835   3.798   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.835   2.258   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.502   1.488   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       9.168   2.258   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       9.168   3.798   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.502   4.568   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.079   4.886   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.774   2.835   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.539   1.169   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.079   1.169   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.450   2.258   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       5.450   3.798   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       6.539   4.886   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.116   4.568   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.783   3.798   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.783   2.258   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.116   1.488   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   13                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9    4                                                       
CONECT   11    9   12   17                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12    7                                                       
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₆N₂

Average Mass

234.3870 Da

Monoisotopic Mass

234.20960 Da

IUPAC Name

(1R,2R,9S,10R)-7,15-diazatetracyclo[7.7.1.0^{2,7}.0^{10,15}]heptadecane

Traditional Name

(1R,2R,9S,10R)-7,15-diazatetracyclo[7.7.1.0^{2,7}.0^{10,15}]heptadecane

CAS Registry Number

Not Available

SMILES

C1CCN2C[C@H]3C[C@@H](CN4CCCC[C@H]34)[C@H]2C1

InChI Identifier

InChI=1S/C15H26N2/c1-3-7-16-11-13-9-12(14(16)5-1)10-17-8-4-2-6-15(13)17/h12-15H,1-11H2/t12-,13+,14-,15-/m1/s1

InChI Key

SLRCCWJSBJZJBV-LXTVHRRPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Camaecytisus absinthioides	-	KNApSAcK
Cytisophyllum sessilifolium	Plant	KNApSAcK
Cytisus scoparius	Plant	KNApSAcK
Genista aucheri	Plant	KNApSAcK
Haplormosia monophylla	Plant	KNApSAcK
Hasperolaburnum platycarpum	-	KNApSAcK
Hesperolaburnum platycarpum	LOTUS Database	35616633
Lupinus excubitus	Plant	KNApSAcK
Rothia indica	LOTUS Database	35616633
Rothia trifoliata	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sparteine, lupanine, and related alkaloids. These are alkaloids with a structure based on either sparteine, lupanine, or derivatives thereof. These are tetracyclic compounds made of two fused quinolizidine ring systems.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Lupin alkaloids

Sub Class

Sparteine, lupanine, and related alkaloids

Direct Parent

Sparteine, lupanine, and related alkaloids

Alternative Parents

Substituents

Sparteine-lupanine skeleton
Quinolizidine
Piperidine
Tertiary aliphatic amine
Tertiary amine
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.98	ALOGPS
logP	2.03	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Basic)	9.16	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	6.48 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	71.82 m³·mol⁻¹	ChemAxon
Polarizability	25.35 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

30772406

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

1774551

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Carvacho HB, Perez C, Zuniga G, Mahn A: Effect of methyl jasmonate, sodium selenate and chitosan as exogenous elicitors on the phenolic compounds profile of broccoli sprouts. J Sci Food Agric. 2014 Sep;94(12):2555-61. doi: 10.1002/jsfa.6596. Epub 2014 Mar 18. [PubMed:24497113 ]

Showing NP-Card for alpha-Isosparteine (NP0055086)

MOL for NP0055086 (alpha-Isosparteine)

3D MOL for NP0055086 (alpha-Isosparteine)

3D SDF for NP0055086 (alpha-Isosparteine)

3D-SDF for NP0055086 (alpha-Isosparteine)

PDB for NP0055086 (alpha-Isosparteine)

3D PDB for NP0055086 (alpha-Isosparteine)

SMILES for NP0055086 (alpha-Isosparteine)

INCHI for NP0055086 (alpha-Isosparteine)

Structure for NP0055086 (alpha-Isosparteine)

3D Structure for NP0055086 (alpha-Isosparteine)