NP-MRD: Showing NP-Card for UDP-L-threo-4-pentosulose (NP0055075)

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Record Information

Version

2.0

Created at

2022-04-28 01:13:30 UTC

Updated at

2022-04-28 01:13:30 UTC

NP-MRD ID

NP0055075

Secondary Accession Numbers

None

Natural Product Identification

Common Name

UDP-L-threo-4-pentosulose

Description

1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-hydroxy-1,2-dihydropyrimidin-2-one belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety. UDP-L-threo-4-pentosulose is found in Arabidopsis thaliana. Based on a literature review very few articles have been published on 1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-hydroxy-1,2-dihydropyrimidin-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282203132D          

 26 28  0  0  1  0            999 V2000
    1.4289   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0964   -2.9599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8414   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0164   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7615   -2.9599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5315   -4.4120    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8671   -5.1657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3822   -5.8331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4383   -5.7469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9232   -6.4143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7739   -4.9932    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2890   -4.3257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6245   -3.5721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3264   -4.4120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8810   -2.7050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 14  1  6  0  0  0
  2 15  1  6  0  0  0
  1 16  1  1  0  0  0
 16 17  1  0  0  0  0
 18 17  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 18 24  1  0  0  0  0
 24 25  1  6  0  0  0
 23 26  1  6  0  0  0
M  END

     RDKit          3D

 44 46  0  0  0  0  0  0  0  0999 V2000
   -5.5699    1.0548    1.5760 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9881    0.3964    0.7525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5543   -0.9789    1.0698 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8760   -1.4452   -0.0802 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7801   -0.5982   -0.3446 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0198   -0.4097    0.7844 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7412   -0.8979    0.7312 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1285   -0.3157   -0.3428 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3745   -0.9280   -0.2389 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1654   -0.0731    0.5246 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5439   -0.4073    0.4586 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0291   -1.5023   -0.1803 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3742   -1.7995   -0.2265 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2696   -0.9555    0.3992 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5228   -1.1940    0.3804 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7762    0.1226    1.0266 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4444    0.3914    1.0563 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1084    1.4347    1.6783 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8410    1.2642   -0.1083 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3415    1.3787   -1.3956 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3324    1.1630   -0.2021 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1521    1.8767   -1.2949 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2223    0.7481   -0.8587 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9496    0.8890   -2.2185 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7015    0.9556   -0.5835 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4141    0.1995   -1.5321 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8198   -0.9749    1.9172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3876   -1.6637    1.2636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2131   -1.1419   -1.1557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7572   -2.0126    0.5466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300   -0.7220    1.6983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3000   -0.4916   -1.3508 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7529   -0.0417    1.5532 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3297   -2.1645   -0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7539   -2.6854   -0.7448 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4670    0.7539    1.4968 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1634    2.0878    0.5554 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6101    1.4014   -2.0801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1659    1.4759    0.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6291    2.6757   -0.9142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6991    1.5695   -0.3081 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3753    0.1387   -2.5048 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9551    2.0323   -0.6635 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8278   -0.6062   -1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
 22 21  1  0
 21  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  0
  2 25  1  0
 25 26  1  0
 25 23  1  0
 23 24  1  0
  8  9  1  0
  9 10  1  0
 10 19  1  0
 19 20  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  2  0
 19 21  1  0
 17 11  1  0
 23  5  1  0
 22 40  1  0
 21 39  1  1
  8 32  1  6
  7 30  1  0
  7 31  1  0
  5 29  1  6
  3 27  1  0
  3 28  1  0
 25 43  1  1
 26 44  1  0
 23 41  1  1
 24 42  1  0
 10 33  1  1
 19 37  1  1
 20 38  1  0
 12 34  1  0
 13 35  1  0
 16 36  1  0
M  END


  Mrv1652304282203132D          

 26 28  0  0  1  0            999 V2000
    1.4289   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0964   -2.9599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8414   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0164   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7615   -2.9599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5315   -4.4120    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8671   -5.1657    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3822   -5.8331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4383   -5.7469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9232   -6.4143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7739   -4.9932    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2890   -4.3257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6245   -3.5721    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3264   -4.4120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8810   -2.7050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 14  1  6  0  0  0
  2 15  1  6  0  0  0
  1 16  1  1  0  0  0
 16 17  1  0  0  0  0
 18 17  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 18 24  1  0  0  0  0
 24 25  1  6  0  0  0
 23 26  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0055075

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H]1[C@H](CO[C@H]2OCC(=O)[C@H](O)[C@@H]2O)O[C@H]([C@H]1O)N1C=CC(=O)NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C14H18N2O10/c17-5-3-24-13(11(22)8(5)19)25-4-6-9(20)10(21)12(26-6)16-2-1-7(18)15-14(16)23/h1-2,6,8-13,19-22H,3-4H2,(H,15,18,23)/t6-,8-,9-,10-,11-,12+,13+/m0/s1

> <INCHI_KEY>
XBRHFUSMQPKIHK-HKJNMXSRSA-N

> <FORMULA>
C14H18N2O10

> <MOLECULAR_WEIGHT>
374.302

> <EXACT_MASS>
374.096144788

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
34.2051539044445

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,2,3,4-tetrahydropyrimidine-2,4-dione

> <ALOGPS_LOGP>
-1.72

> <JCHEM_LOGP>
-3.0927558886666664

> <ALOGPS_LOGS>
-0.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.97832253869375

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.677723173233368

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6638456896281966

> <JCHEM_POLAR_SURFACE_AREA>
175.09

> <JCHEM_REFRACTIVITY>
78.1746

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.41e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-3H-pyrimidine-2,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.913  -5.525   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.437  -6.990   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.897  -6.990   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.421  -5.525   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0       0.992  -8.236   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.619  -9.643   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.713 -10.888   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.818 -10.727   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -1.723 -11.973   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0      -1.445  -9.321   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0      -0.539  -8.075   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.166  -6.668   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       4.343  -8.236   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       5.378  -5.049   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
CONECT    1    2    5   16                                                  
CONECT    2    1    3   15                                                  
CONECT    3    2    4   14                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11    6   13                                                  
CONECT   13   12                                                            
CONECT   14    3                                                            
CONECT   15    2                                                            
CONECT   16    1   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   24                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   26                                                  
CONECT   24   23   18   25                                                  
CONECT   25   24                                                            
CONECT   26   23                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₁₈N₂O₁₀

Average Mass

374.3020 Da

Monoisotopic Mass

374.09614 Da

IUPAC Name

1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-1,2,3,4-tetrahydropyrimidine-2,4-dione

Traditional Name

1-[(2R,3S,4R,5S)-5-({[(2S,3S,4R)-3,4-dihydroxy-5-oxooxan-2-yl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-3H-pyrimidine-2,4-dione

CAS Registry Number

Not Available

SMILES

O[C@H]1[C@H](CO[C@H]2OCC(=O)[C@H](O)[C@@H]2O)O[C@H]([C@H]1O)N1C=CC(=O)NC1=O

InChI Identifier

InChI=1S/C14H18N2O10/c17-5-3-24-13(11(22)8(5)19)25-4-6-9(20)10(21)12(26-6)16-2-1-7(18)15-14(16)23/h1-2,6,8-13,19-22H,3-4H2,(H,15,18,23)/t6-,8-,9-,10-,11-,12+,13+/m0/s1

InChI Key

XBRHFUSMQPKIHK-HKJNMXSRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arabidopsis thaliana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleosides

Sub Class

Not Available

Direct Parent

Pyrimidine nucleosides

Alternative Parents

Substituents

Pyrimidine nucleoside
N-glycosyl compound
Glycosyl compound
Disaccharide
Hydroxypyrimidine
Pyrimidone
Pyrimidine
Oxane
Hydropyrimidine
Heteroaromatic compound
Tetrahydrofuran
Cyclic ketone
Secondary alcohol
Ketone
Oxacycle
Azacycle
Organoheterocyclic compound
Acetal
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.7	ALOGPS
logP	-3.1	ChemAxon
logS	-0.65	ALOGPS
pKa (Strongest Acidic)	9.68	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	175.09 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	78.17 m³·mol⁻¹	ChemAxon
Polarizability	34.21 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163106527

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for UDP-L-threo-4-pentosulose (NP0055075)

MOL for NP0055075 (UDP-L-threo-4-pentosulose)

3D MOL for NP0055075 (UDP-L-threo-4-pentosulose)

3D SDF for NP0055075 (UDP-L-threo-4-pentosulose)

3D-SDF for NP0055075 (UDP-L-threo-4-pentosulose)

PDB for NP0055075 (UDP-L-threo-4-pentosulose)

3D PDB for NP0055075 (UDP-L-threo-4-pentosulose)

SMILES for NP0055075 (UDP-L-threo-4-pentosulose)

INCHI for NP0055075 (UDP-L-threo-4-pentosulose)

Structure for NP0055075 (UDP-L-threo-4-pentosulose)

3D Structure for NP0055075 (UDP-L-threo-4-pentosulose)