NP-MRD: Showing NP-Card for 6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside (NP0055021)

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Record Information

Version

2.0

Created at

2022-04-28 01:11:29 UTC

Updated at

2022-04-28 01:11:29 UTC

NP-MRD ID

NP0055021

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside

Description

6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. 6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside is found in Arabidopsis thaliana. Based on a literature review very few articles have been published on 6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282203112D          

 30 32  0  0  1  0            999 V2000
   -1.4289   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5004   -3.8701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9853   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5004   -5.2049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7553   -5.9896    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2033   -6.6027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5623   -6.1611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  4 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
  3 28  1  1  0  0  0
  2 29  1  6  0  0  0
  1 30  1  6  0  0  0
M  END

     RDKit          3D

 49 51  0  0  0  0  0  0  0  0999 V2000
    7.4239    0.4496    0.1228 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4971   -0.7528    0.5284 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7201   -1.3905    0.4778 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2728   -1.4330    1.0420 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1116   -0.4755    0.9664 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3011    0.6753    0.5201 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9165   -0.9167    1.3892 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7089   -0.2755    1.4094 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0511   -0.0956    0.1074 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8237    0.5721    0.3452 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1395    0.1321   -0.5661 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2283    0.9904   -0.6136 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5254    0.6977   -0.2688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4934    1.7130   -0.3881 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8059    1.4898   -0.0615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1981    0.2373    0.3981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4360   -0.2538    0.7919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6906    0.4822    0.8143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7398   -0.0933    1.1963 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7640    1.8089    0.4243 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2208   -1.5707    1.1516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9260   -1.8707    0.9882 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2871   -0.7850    0.5309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9708   -0.5198    0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4732   -0.0817   -1.9335 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5816   -1.4372   -2.2265 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7169    0.6899   -2.1579 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4885    1.9969   -2.5921 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7099    0.6550   -0.9861 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8870    2.0217   -0.6624 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5591   -0.8525    0.5174 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4363   -1.6402    2.1187 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0781   -2.3476    0.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0076   -0.9012    2.0404 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7746    0.7358    1.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8202   -1.1322   -0.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4615   -0.8538   -0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1630    2.6959   -0.7533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5472    2.2773   -0.1559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6325    2.5089    1.1446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0104   -2.2349    1.5100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5233   -2.8077    1.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2770   -1.3383    0.3039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2844    0.3149   -2.6710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0318   -1.9120   -1.6086 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2569    0.2039   -3.0158 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5300    2.2251   -2.6077 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6487    0.1856   -1.3560 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5612    2.2129    0.2377 H   0  0  0  0  0  0  0  0  0  0  0  0
 30 29  1  0
 29  9  1  0
  9  8  1  0
  8  7  1  0
  7  5  1  0
  5  6  2  0
  5  4  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 23  1  0
 23 22  1  0
 22 21  1  0
 21 17  2  0
 17 18  1  0
 18 20  1  0
 18 19  2  0
 23 24  2  0
 11 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 27 29  1  0
 24 13  1  0
 17 16  1  0
 30 49  1  0
 29 48  1  6
  9 36  1  6
  8 34  1  0
  8 35  1  0
  4 32  1  0
  4 33  1  0
  3 31  1  0
 11 37  1  1
 14 38  1  0
 15 39  1  0
 22 42  1  0
 21 41  1  0
 20 40  1  0
 24 43  1  0
 25 44  1  6
 26 45  1  0
 27 46  1  6
 28 47  1  0
M  END


  Mrv1652304282203112D          

 30 32  0  0  1  0            999 V2000
   -1.4289   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5004   -3.8701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9853   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5004   -5.2049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7553   -5.9896    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2033   -6.6027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5623   -6.1611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
  4 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 16 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
  3 28  1  1  0  0  0
  2 29  1  6  0  0  0
  1 30  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0055021

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H]1[C@@H](COC(=O)CC(O)=O)O[C@@H](OC2=CC=C3C(NC=C3C(O)=O)=C2)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H19NO11/c20-12(21)4-13(22)28-6-11-14(23)15(24)16(25)18(30-11)29-7-1-2-8-9(17(26)27)5-19-10(8)3-7/h1-3,5,11,14-16,18-19,23-25H,4,6H2,(H,20,21)(H,26,27)/t11-,14+,15+,16-,18-/m1/s1

> <INCHI_KEY>
SFCSLFWAODSGKQ-PTERYMMESA-N

> <FORMULA>
C18H19NO11

> <MOLECULAR_WEIGHT>
425.346

> <EXACT_MASS>
425.095810436

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
39.295998660688014

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid

> <ALOGPS_LOGP>
-0.35

> <JCHEM_LOGP>
-0.5086888416666673

> <ALOGPS_LOGS>
-2.18

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.765862081800027

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.1549262187845373

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6491030253595014

> <JCHEM_POLAR_SURFACE_AREA>
195.83999999999995

> <JCHEM_REFRACTIVITY>
94.02159999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.82e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -4.001  -6.930   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000  -7.700   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      -6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      -8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0     -12.134  -7.224   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0     -13.039  -8.470   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -12.134  -9.716   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -12.610 -11.181   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0     -11.579 -12.325   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0     -14.116 -11.501   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      -6.668 -10.010   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -4.001 -11.550   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -1.334 -10.010   0.000  0.00  0.00           O+0
CONECT    1    2    6   30                                                  
CONECT    2    1    3   29                                                  
CONECT    3    2    4   28                                                  
CONECT    4    3    5   15                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15    4   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20   16                                                       
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   19   25                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28    3                                                            
CONECT   29    2                                                            
CONECT   30    1                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Value	Source
6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylate	Generator

Chemical Formula

C₁₈H₁₉NO₁₁

Average Mass

425.3460 Da

Monoisotopic Mass

425.09581 Da

IUPAC Name

6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid

Traditional Name

6-{[(2S,3R,4S,5R,6R)-6-{[(2-carboxyacetyl)oxy]methyl}-3,4,5-trihydroxyoxan-2-yl]oxy}-1H-indole-3-carboxylic acid

CAS Registry Number

Not Available

SMILES

O[C@H]1[C@@H](COC(=O)CC(O)=O)O[C@@H](OC2=CC=C3C(NC=C3C(O)=O)=C2)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C18H19NO11/c20-12(21)4-13(22)28-6-11-14(23)15(24)16(25)18(30-11)29-7-1-2-8-9(17(26)27)5-19-10(8)3-7/h1-3,5,11,14-16,18-19,23-25H,4,6H2,(H,20,21)(H,26,27)/t11-,14+,15+,16-,18-/m1/s1

InChI Key

SFCSLFWAODSGKQ-PTERYMMESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arabidopsis thaliana	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Indolecarboxylic acid derivative
O-glycosyl compound
Tricarboxylic acid or derivatives
Indole or derivatives
Indole
Pyrrole-3-carboxylic acid or derivatives
Pyrrole-3-carboxylic acid
Benzenoid
1,3-dicarbonyl compound
Substituted pyrrole
Oxane
Monosaccharide
Heteroaromatic compound
Vinylogous amide
Pyrrole
Secondary alcohol
Carboxylic acid ester
Oxacycle
Azacycle
Organoheterocyclic compound
Polyol
Carboxylic acid
Carboxylic acid derivative
Acetal
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.35	ALOGPS
logP	-0.51	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	3.15	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	195.84 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	94.02 m³·mol⁻¹	ChemAxon
Polarizability	39.3 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163105947

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for 6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside (NP0055021)

MOL for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

3D MOL for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

3D SDF for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

3D-SDF for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

PDB for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

3D PDB for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

SMILES for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

INCHI for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

Structure for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)

3D Structure for NP0055021 (6-hydroxyindole-3-carboxylic acid 6-O-(6'-malonyl)beta-D-glucopyranoside)