NP-MRD: Showing NP-Card for (+)-Panduratin A (NP0054824)

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Record Information

Version

2.0

Created at

2022-04-28 01:03:10 UTC

Updated at

2022-04-28 01:03:10 UTC

NP-MRD ID

NP0054824

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(+)-Panduratin A

Description

Panduratin A belongs to the class of organic compounds known as linear diarylheptanoids. These are diarylheptanoids with an open heptane chain. The two aromatic rings are linked only by the heptane chain. (+)-Panduratin A is found in Boesenbergia pandurata , Boesenbergia rotunda, Boesenbergia rotunda (LINN.) MANSF. , Kaempferia pandurata and Renealmia nicolaioides. (+)-Panduratin A was first documented in 2021 (PMID: 34771049). Based on a literature review a small amount of articles have been published on Panduratin A (PMID: 35457146) (PMID: 35306173) (PMID: 35217281) (PMID: 34623617).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282203032D          

 30 32  0  0  1  0            999 V2000
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0374   -1.7362    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 13  1  0  0  0  0
  1 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  1 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 15 25  1  0  0  0  0
 14 26  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
M  END

     RDKit          3D

 60 62  0  0  0  0  0  0  0  0999 V2000
    6.6926    1.4702    1.6497 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0934    0.5437    0.7763 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7029    0.4842    0.6461 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0933   -0.4031   -0.1918 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7150   -0.4431   -0.3034 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1658   -1.3545   -1.1693 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9122    0.4047    0.4234 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4688    0.3672    0.3774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1906    1.2239    1.0492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3842   -0.5969   -0.3778 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7795    0.0108   -0.4293 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6859    1.2355   -1.2897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9470    1.9990   -1.4570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9964    3.3235   -1.2097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2332    4.1125   -1.3637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7490    4.0007   -0.7900 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3858    0.1627    0.8878 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2283    1.3105    1.2846 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1671   -0.8337    1.7645 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3793   -2.0241    1.4721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3531   -1.8867    0.3752 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3228   -3.1318   -0.4084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2856   -3.5005   -1.3009 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2637   -4.6851   -2.0375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2147   -5.5443   -1.8648 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7774   -5.2225   -0.9818 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7246   -4.0616   -0.2815 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5286    1.3019    1.2692 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8897    2.2141    2.0605 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9263    1.3227    1.3638 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7750    1.2827    1.7229 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2327    1.3516    2.6725 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4774    2.5176    1.3262 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7185   -1.0865   -0.7770 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7246   -1.9798   -1.7072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0160   -0.7055   -1.3787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4873   -0.6683   -1.0018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8749    1.9412   -1.0030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3972    0.9497   -2.3537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8824    1.5628   -1.7764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6157    4.3226   -0.3257 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9669    5.0853   -1.7957 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0485    3.5891   -1.8829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9909    5.0689   -0.5706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9679    3.9499   -1.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2921    3.5898    0.1311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6894    2.2529    1.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7240    1.1120    2.2934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1312    1.4240    0.6170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6189   -0.7193    2.7485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1142   -2.8268    1.1573 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -2.4246    2.4288 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6238   -1.8889    0.9638 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1230   -2.8797   -1.4739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0847   -4.9027   -2.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2095   -6.4705   -2.4488 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5988   -5.9395   -0.8738 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5247   -3.8283    0.4142 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0005    2.4915    2.2635 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4004    2.0289    2.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  3
 14 15  1  0
 14 16  1  0
 11 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
  7 28  1  0
 28 29  1  0
 28 30  2  0
 30  3  1  0
 21 10  1  0
 27 22  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  4 34  1  0
  6 35  1  0
 10 36  1  6
 11 37  1  6
 12 38  1  0
 12 39  1  0
 13 40  1  0
 15 41  1  0
 15 42  1  0
 15 43  1  0
 16 44  1  0
 16 45  1  0
 16 46  1  0
 18 47  1  0
 18 48  1  0
 18 49  1  0
 19 50  1  0
 20 51  1  0
 20 52  1  0
 21 53  1  1
 23 54  1  0
 24 55  1  0
 25 56  1  0
 26 57  1  0
 27 58  1  0
 29 59  1  0
 30 60  1  0
M  END


  Mrv1652304282203032D          

 30 32  0  0  1  0            999 V2000
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0374   -1.7362    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  6  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 13  1  0  0  0  0
  1 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  1 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 15 25  1  0  0  0  0
 14 26  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0054824

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(O)=C(C(=O)[C@@H]2[C@H](CC=C(C)C)C(C)=CC[C@H]2C2=CC=CC=C2)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C26H30O4/c1-16(2)10-12-20-17(3)11-13-21(18-8-6-5-7-9-18)24(20)26(29)25-22(27)14-19(30-4)15-23(25)28/h5-11,14-15,20-21,24,27-28H,12-13H2,1-4H3/t20-,21+,24-/m1/s1

> <INCHI_KEY>
LYDZCXVWCFJAKQ-ZFGGDYGUSA-N

> <FORMULA>
C26H30O4

> <MOLECULAR_WEIGHT>
406.522

> <EXACT_MASS>
406.214409446

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
45.61006143918346

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-methoxy-2-[(1R,2S,6R)-3-methyl-2-(3-methylbut-2-en-1-yl)-6-phenylcyclohex-3-ene-1-carbonyl]benzene-1,3-diol

> <ALOGPS_LOGP>
5.39

> <JCHEM_LOGP>
6.984021033666667

> <ALOGPS_LOGS>
-4.91

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.180647222637118

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.867994615521672

> <JCHEM_PKA_STRONGEST_BASIC>
-4.661813560221305

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
121.88040000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.00e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-methoxy-2-[(1R,2S,6R)-3-methyl-2-(3-methylbut-2-en-1-yl)-6-phenylcyclohex-3-ene-1-carbonyl]benzene-1,3-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.803  -3.241   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       6.668  -6.930   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       9.336  -2.310   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
CONECT    1    2   14   18                                                  
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9                                                  
CONECT    5    4    6   13                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   11                                                  
CONECT    8    7    9                                                       
CONECT    9    8    4   10                                                  
CONECT   10    9                                                            
CONECT   11    7   12                                                       
CONECT   12   11                                                            
CONECT   13    5                                                            
CONECT   14    1   15   26                                                  
CONECT   15   14   16   25                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    1   19                                                  
CONECT   19   18   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   19                                                       
CONECT   25   15                                                            
CONECT   26   14   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₀O₄

Average Mass

406.5220 Da

Monoisotopic Mass

406.21441 Da

IUPAC Name

5-methoxy-2-[(1R,2S,6R)-3-methyl-2-(3-methylbut-2-en-1-yl)-6-phenylcyclohex-3-ene-1-carbonyl]benzene-1,3-diol

Traditional Name

5-methoxy-2-[(1R,2S,6R)-3-methyl-2-(3-methylbut-2-en-1-yl)-6-phenylcyclohex-3-ene-1-carbonyl]benzene-1,3-diol

CAS Registry Number

Not Available

SMILES

COC1=CC(O)=C(C(=O)[C@@H]2[C@H](CC=C(C)C)C(C)=CC[C@H]2C2=CC=CC=C2)C(O)=C1

InChI Identifier

InChI=1S/C26H30O4/c1-16(2)10-12-20-17(3)11-13-21(18-8-6-5-7-9-18)24(20)26(29)25-22(27)14-19(30-4)15-23(25)28/h5-11,14-15,20-21,24,27-28H,12-13H2,1-4H3/t20-,21+,24-/m1/s1

InChI Key

LYDZCXVWCFJAKQ-ZFGGDYGUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Boesenbergia pandurata	Plant	KNApSAcK
Boesenbergia rotunda	LOTUS Database	35616633
Boesenbergia rotunda (LINN.) MANSF.	Plant	KNApSAcK
Kaempferia pandurata	Plant	KNApSAcK
Renealmia nicolaioides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as linear diarylheptanoids. These are diarylheptanoids with an open heptane chain. The two aromatic rings are linked only by the heptane chain.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Diarylheptanoids

Sub Class

Linear diarylheptanoids

Direct Parent

Linear diarylheptanoids

Alternative Parents

Substituents

Linear 1,7-diphenylheptane skeleton
Alkyl-phenylketone
Methoxyphenol
Monocyclic monoterpenoid
Monoterpenoid
Aromatic monoterpenoid
Phenylketone
Benzoyl
Phenoxy compound
Phenol ether
Resorcinol
Aryl ketone
Aryl alkyl ketone
Methoxybenzene
Anisole
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Vinylogous acid
Ketone
Ether
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

diarylheptanoid (CHEBI:66725 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.39	ALOGPS
logP	6.98	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	8.87	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	121.88 m³·mol⁻¹	ChemAxon
Polarizability	45.61 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00007134

Chemspider ID

4984097

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6483648

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Tonum K, Srimai N, Chabang N, Fongsupa S, Tuchinda P, Torres JA, Weimbs T, Soodvilai S: Pharmacological Effects of Panduratin A on Renal Cyst Development in In Vitro and In Vivo Models of Polycystic Kidney Disease. Int J Mol Sci. 2022 Apr 14;23(8). pii: ijms23084328. doi: 10.3390/ijms23084328. [PubMed:35457146 ]
Bailly C: Toward the use of Boesenbergia rotunda extracts and the chalcone panduratin A to treat periodontitis. J Oral Biosci. 2022 Jun;64(2):183-192. doi: 10.1016/j.job.2022.03.002. Epub 2022 Mar 17. [PubMed:35306173 ]
Worakajit N, Thipboonchoo N, Chaturongakul S, Jutabha P, Soontornniyomkij V, Tuchinda P, Soodvilai S: Nephroprotective potential of Panduratin A against colistin-induced renal injury via attenuating mitochondrial dysfunction and cell apoptosis. Biomed Pharmacother. 2022 Apr;148:112732. doi: 10.1016/j.biopha.2022.112732. Epub 2022 Feb 24. [PubMed:35217281 ]
Thongnuanjan P, Soodvilai S, Fongsupa S, Thipboonchoo N, Chabang N, Munyoo B, Tuchinda P, Soodvilai S: Panduratin A Derivative Protects against Cisplatin-Induced Apoptosis of Renal Proximal Tubular Cells and Kidney Injury in Mice. Molecules. 2021 Nov 2;26(21). pii: molecules26216642. doi: 10.3390/molecules26216642. [PubMed:34771049 ]
Liana D, Phanumartwiwath A: Leveraging knowledge of Asian herbal medicine and its active compounds as COVID-19 treatment and prevention. J Nat Med. 2022 Jan;76(1):20-37. doi: 10.1007/s11418-021-01575-1. Epub 2021 Oct 8. [PubMed:34623617 ]

Showing NP-Card for (+)-Panduratin A (NP0054824)

MOL for NP0054824 ((+)-Panduratin A)

3D MOL for NP0054824 ((+)-Panduratin A)

3D SDF for NP0054824 ((+)-Panduratin A)

3D-SDF for NP0054824 ((+)-Panduratin A)

PDB for NP0054824 ((+)-Panduratin A)

3D PDB for NP0054824 ((+)-Panduratin A)

SMILES for NP0054824 ((+)-Panduratin A)

INCHI for NP0054824 ((+)-Panduratin A)

Structure for NP0054824 ((+)-Panduratin A)

3D Structure for NP0054824 ((+)-Panduratin A)