NP-MRD: Showing NP-Card for Lophirone K (NP0054395)

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Record Information

Version

2.0

Created at

2022-04-28 00:45:33 UTC

Updated at

2022-04-28 00:45:33 UTC

NP-MRD ID

NP0054395

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Lophirone K

Description

(2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2,3-dihydro-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. Lophirone K is found in Ochna calodendron. Based on a literature review very few articles have been published on (2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2,3-dihydro-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652304282202452D          

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M  END

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M  END


  Mrv1652304282202452D          

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M  END
> <DATABASE_ID>
NP0054395

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C(C=C1)[C@@H]1OC2=C(C=C(\C=C\C(=O)C3=CC=C(O)C=C3O)C=C2)[C@@]1(O)C(=O)C1=C(O)C=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C30H22O9/c31-18-5-3-17(4-6-18)29-30(38,28(37)22-10-8-20(33)15-26(22)36)23-13-16(2-12-27(23)39-29)1-11-24(34)21-9-7-19(32)14-25(21)35/h1-15,29,31-33,35-36,38H/b11-1+/t29-,30+/m0/s1

> <INCHI_KEY>
GDMUJTCVAAEMOF-AAKRSOLMSA-N

> <FORMULA>
C30H22O9

> <MOLECULAR_WEIGHT>
526.497

> <EXACT_MASS>
526.126382288

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
53.33989696729337

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2,3-dihydro-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one

> <ALOGPS_LOGP>
4.14

> <JCHEM_LOGP>
5.880329487999999

> <ALOGPS_LOGS>
-4.83

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.7756795477396015

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.019817934910116

> <JCHEM_PKA_STRONGEST_BASIC>
-4.520546437827169

> <JCHEM_POLAR_SURFACE_AREA>
164.75

> <JCHEM_REFRACTIVITY>
141.9861

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.72e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2H-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.454   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.121  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.322   2.016   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.322  -0.476   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.877   0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.107  -0.564   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.433  -0.564   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.203   0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.433   2.104   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.107   2.104   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -3.743   0.770   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.627   3.526   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.086   4.017   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.472   4.544   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.776   6.054   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.621   7.072   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.161   6.581   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.143   5.071   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.012   4.053   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -0.994   7.599   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       4.236   6.545   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       2.189   3.058   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.788   2.310   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.788   3.850   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.122   4.620   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      10.122   6.160   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      11.455   3.850   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.789   4.620   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      14.123   3.850   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      14.123   2.310   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      12.789   1.540   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      11.455   2.310   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      10.122   1.540   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0      15.456   1.540   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3   28                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    9                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6    8   17   27                                             
CONECT    8    7    9   10                                                  
CONECT    9    8    5                                                       
CONECT   10    8   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14   10                                                       
CONECT   16   13                                                            
CONECT   17    7   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   24                                                  
CONECT   20   19   21   26                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23   19                                                       
CONECT   25   22                                                            
CONECT   26   20                                                            
CONECT   27    7                                                            
CONECT   28    2   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   37                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   39                                                  
CONECT   36   35   37                                                       
CONECT   37   36   32   38                                                  
CONECT   38   37                                                            
CONECT   39   35                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₂₂O₉

Average Mass

526.4970 Da

Monoisotopic Mass

526.12638 Da

IUPAC Name

(2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2,3-dihydro-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one

Traditional Name

(2E)-3-[(2S,3S)-3-(2,4-dihydroxybenzoyl)-3-hydroxy-2-(4-hydroxyphenyl)-2H-1-benzofuran-5-yl]-1-(2,4-dihydroxyphenyl)prop-2-en-1-one

CAS Registry Number

Not Available

SMILES

OC1=CC=C(C=C1)[C@@H]1OC2=C(C=C(\C=C\C(=O)C3=CC=C(O)C=C3O)C=C2)[C@@]1(O)C(=O)C1=C(O)C=C(O)C=C1

InChI Identifier

InChI=1S/C30H22O9/c31-18-5-3-17(4-6-18)29-30(38,28(37)22-10-8-20(33)15-26(22)36)23-13-16(2-12-27(23)39-29)1-11-24(34)21-9-7-19(32)14-25(21)35/h1-15,29,31-33,35-36,38H/b11-1+/t29-,30+/m0/s1

InChI Key

GDMUJTCVAAEMOF-AAKRSOLMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ochna calodendron	Plant	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

2-arylbenzofuran flavonoids

Sub Class

Not Available

Direct Parent

2-arylbenzofuran flavonoids

Alternative Parents

Substituents

2-arylbenzofuran flavonoid
Furanochalcone
2'-hydroxychalcone
Neolignan skeleton
Alkyl-phenylketone
Benzofuran
Coumaran
Phenylketone
Benzoyl
Resorcinol
Aryl alkyl ketone
Aryl ketone
Styrene
Phenol
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Monocyclic benzene moiety
Benzenoid
Acryloyl-group
Alpha-hydroxy ketone
Enone
Vinylogous acid
Alpha,beta-unsaturated ketone
Tertiary alcohol
Ketone
Ether
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.14	ALOGPS
logP	5.88	ChemAxon
logS	-4.8	ALOGPS
pKa (Strongest Acidic)	7.02	ChemAxon
pKa (Strongest Basic)	-4.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	164.75 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	141.99 m³·mol⁻¹	ChemAxon
Polarizability	53.34 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163037688

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Lophirone K (NP0054395)

MOL for NP0054395 (Lophirone K)

3D MOL for NP0054395 (Lophirone K)

3D SDF for NP0054395 (Lophirone K)

3D-SDF for NP0054395 (Lophirone K)

PDB for NP0054395 (Lophirone K)

3D PDB for NP0054395 (Lophirone K)

SMILES for NP0054395 (Lophirone K)

INCHI for NP0054395 (Lophirone K)

Structure for NP0054395 (Lophirone K)

3D Structure for NP0054395 (Lophirone K)