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Record Information
Version2.0
Created at2022-04-28 00:36:07 UTC
Updated at2022-04-28 00:36:07 UTC
NP-MRD IDNP0054159
Secondary Accession NumbersNone
Natural Product Identification
Common NameFlavocommelin
DescriptionFlavocommelin belongs to the class of organic compounds known as flavonoid o-glycosides. Flavonoid O-glycosides are compounds containing a carbohydrate moiety which is O-glycosidically linked to the 2-phenylchromen-4-one flavonoid backbone. Thus, flavocommelin is considered to be a flavonoid. Flavocommelin is found in Commelina communis , Cymophyllus fraseri, Justicia pectoralis and Swertia japonica . Flavocommelin was first documented in 2012 (PMID: 23025407). Based on a literature review a small amount of articles have been published on Flavocommelin (PMID: 25053021) (PMID: 24891158) (PMID: 24400891) (PMID: 23603241).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H32O15
Average Mass608.5490 Da
Monoisotopic Mass608.17412 Da
IUPAC Name5-hydroxy-7-methoxy-6-[(2S,3R,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]-2-(4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-4H-chromen-4-one
Traditional Name5-hydroxy-7-methoxy-6-[(2S,3R,4R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]-2-(4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)chromen-4-one
CAS Registry NumberNot Available
SMILES
COC1=C([C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C(O)=C2C(=O)C=C(OC2=C1)C1=CC=C(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C=C1
InChI Identifier
InChI=1S/C28H32O15/c1-39-14-7-15-18(22(34)19(14)27-25(37)23(35)20(32)16(8-29)42-27)12(31)6-13(41-15)10-2-4-11(5-3-10)40-28-26(38)24(36)21(33)17(9-30)43-28/h2-7,16-17,20-21,23-30,32-38H,8-9H2,1H3/t16-,17-,20-,21-,23+,24+,25-,26-,27+,28-/m1/s1
InChI KeyQLOUGKRWTZAXFE-JFECCKQBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Commelina communisPlant
Cymophyllus fraseriPlant
Justicia pectoralisPlant
Swertia japonicaPlant
Chemical Taxonomy
Description Belongs to the class of organic compounds known as flavonoid o-glycosides. Flavonoid O-glycosides are compounds containing a carbohydrate moiety which is O-glycosidically linked to the 2-phenylchromen-4-one flavonoid backbone.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentFlavonoid O-glycosides
Alternative Parents
Substituents
  • Flavonoid o-glycoside
  • Flavonoid-4p-o-glycoside
  • Flavonoid c-glycoside
  • 7-methoxyflavonoid-skeleton
  • Hydroxyflavonoid
  • 5-hydroxyflavonoid
  • Flavone
  • Phenolic glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Fatty acyl glycoside
  • Alkyl glycoside
  • Chromone
  • Glycosyl compound
  • O-glycosyl compound
  • C-glycosyl compound
  • 1-benzopyran
  • Benzopyran
  • Phenoxy compound
  • Phenol ether
  • Anisole
  • Pyranone
  • Alkyl aryl ether
  • 1-hydroxy-4-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • Fatty acyl
  • Benzenoid
  • Pyran
  • Oxane
  • Monosaccharide
  • Vinylogous acid
  • Heteroaromatic compound
  • Secondary alcohol
  • Acetal
  • Ether
  • Dialkyl ether
  • Organoheterocyclic compound
  • Oxacycle
  • Polyol
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Primary alcohol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.58ALOGPS
logP-2.2ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)6.93ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area245.29 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity142.66 m³·mol⁻¹ChemAxon
Polarizability60.54 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00006263
Chemspider ID4476234
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5317357
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Asada T, Koi Y, Tamura H: New technique to isolate anthocyanins from Delaware grapes by forming an aluminium complex using a Discovery DPA-6S. Food Chem. 2015 Jan 1;166:10-16. doi: 10.1016/j.foodchem.2014.05.100. Epub 2014 Jun 6. [PubMed:25053021 ]
  2. Asada T, Koi Y, Arakawa R, Zhu F, Sadaoka M, Tamura H: Isolation techniques for anthocyanidin 3,5-diglucosides and their related chemicals using supramolecules technique, and two solid-phase extraction cartridges. J Chromatogr A. 2014 Jul 18;1351:21-8. doi: 10.1016/j.chroma.2014.05.039. Epub 2014 May 22. [PubMed:24891158 ]
  3. Zhu F, Asada T, Sato A, Koi Y, Nishiwaki H, Tamura H: Rosmarinic acid extract for antioxidant, antiallergic, and alpha-glucosidase inhibitory activities, isolated by supramolecular technique and solvent extraction from Perilla leaves. J Agric Food Chem. 2014 Jan 29;62(4):885-92. doi: 10.1021/jf404318j. Epub 2014 Jan 15. [PubMed:24400891 ]
  4. Misawa K, Gunji Y, Sato S: Concise synthesis of flavocommelin, 7-O-methylapigenin 6-C-, 4'-O-bis-beta-D-glucoside, a component of the blue supramolecular pigment from Commelina communis. Carbohydr Res. 2013 Jun 7;374:8-13. doi: 10.1016/j.carres.2013.03.016. Epub 2013 Mar 30. [PubMed:23603241 ]
  5. Asada T, Tamura H: Isolation of bilberry anthocyanidin 3-glycosides bearing ortho-dihydroxyl groups on the B ring by forming an aluminum complex and their antioxidant activity. J Agric Food Chem. 2012 Oct 24;60(42):10634-40. doi: 10.1021/jf302476n. Epub 2012 Oct 12. [PubMed:23025407 ]